make: *** [Makefile:3: all] Error 2
0
Trying to build and install PharmDock
make
But I get this make error and I don't understand what's wrong
make[1]: Entering directory '/home/ahmed/PharmDock/src/pharmdock'
make[1]: 'docking' is up to date.
make[1]: Leaving directory '/home/ahmed/PharmDock/src/pharmdock'
cd clusterconformers && make && cp clusterconformers ../../bin/genLigPharm/
make[1]: Entering directory '/home/ahmed/PharmDock/src/clusterconformers'
/home/ahmed/anaconda3/bin/x86_64-conda_cos6-linux-gnu-c++ -g3 -O3 -ffast-math -Wall -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -c -o Residue.o Residue.cpp
Residue.cpp: In member function 'void Residue::AssignElements()':
Residue.cpp:55:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:55:95: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:60:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CA2+")) == 0 ||
^
Residue.cpp:61:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CA2")) == 0 ||
^
Residue.cpp:62:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Ca2+")) == 0)
^
Residue.cpp:67:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CO2+")) == 0)
^
Residue.cpp:72:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CU2+")) == 0 ||
^
Residue.cpp:73:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CU")) == 0)
^
Residue.cpp:78:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "ZN2+")) == 0 ||
^
Residue.cpp:79:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN2")) == 0 ||
^
Residue.cpp:80:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN")) == 0)
^
Residue.cpp:85:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "NA1+")) == 0)
^
Residue.cpp:90:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "FE")) == 0 ||
^
Residue.cpp:91:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe")) == 0 ||
^
Residue.cpp:92:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE2+")) == 0 ||
^
Residue.cpp:93:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe2+")) == 0 ||
^
Residue.cpp:94:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE3+")) == 0 ||
^
Residue.cpp:95:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe3+")) == 0 ||
^
Residue.cpp:96:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE5+")) == 0 ||
^
Residue.cpp:97:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe5+")) == 0)
^
Residue.cpp:102:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:102:100: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:107:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "H")) == 0)
^
Residue.cpp:112:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "B")) == 0)
^
Residue.cpp:117:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "C")) == 0)
^
Residue.cpp:122:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "N")) == 0)
^
Residue.cpp:127:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "O")) == 0)
^
Residue.cpp:132:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "F")) == 0)
^
Residue.cpp:137:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "P")) == 0)
^
Residue.cpp:142:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "S")) == 0)
^
Residue.cpp:147:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "I")) == 0)
^
Residue.cpp:152:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMC")) == 0)
^
Residue.cpp:157:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMA")) == 0)
^
Residue.cpp:162:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMD")) == 0)
^
Residue.cpp:167:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMH")) == 0)
^
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:689:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:689:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1290:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:1290:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp:1271:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, s, charged_atom_id=-999;
^
Residue.cpp: In member function 'void Residue::AssignTorsions()':
Residue.cpp:2571:17: warning: unused variable 'ni' [-Wunused-variable]
int ni, nc, flagOneTorsion;
^~
Residue.cpp: In member function 'void Residue::FindSoma()':
Residue.cpp:2860:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if((save_counter[p] == 2 && (atom[save_store[p][0]]->element == eO && atom[save_store[p][1]]->element == eH) || (atom[save_store[p][0]]->element == eH && atom[save_store[p][1]]->element == eO)))
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Residue.cpp:2768:14: warning: unused variable 'pt' [-Wunused-variable]
torsion *pt;
^~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresCharged(int, LPE*, int*, LPE*, int*)':
Residue.cpp:3253:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:22: warning: unused variable 'm' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:25: warning: unused variable 'flag_assigned' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresHPhob(int, LPE*, int*)':
Residue.cpp:3373:16: warning: unused variable 'nhp' [-Wunused-variable]
int flag, nhp;
^~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresAro(int, LPE*, int*)':
Residue.cpp:3593:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, cr, flag;
^
Residue.cpp: In member function 'void Residue::SortTriangles(float, float, float)':
Residue.cpp:4317:12: warning: unused variable 'max_short' [-Wunused-variable]
float max_short = short_interval*100;
^~~~~~~~~
Residue.cpp: In member function 'void Residue::DetermineSizeOfLigand()':
Residue.cpp:4666:11: warning: unused variable 'fact' [-Wunused-variable]
float fact;
^~~~
Residue.cpp:4667:42: warning: unused variable 'min_i' [-Wunused-variable]
int i, j, k, m, cf, ci, jx, jy, jz, min_i;
^~~~~
Residue.cpp:4668:11: warning: unused variable 'min_dist' [-Wunused-variable]
float min_dist, d2;
^~~~~~~~
Residue.cpp:4668:21: warning: unused variable 'd2' [-Wunused-variable]
float min_dist, d2;
^~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:4956:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6185:19: warning: unused variable 'k' [-Wunused-variable]
int i, j, k, ci, lc;
^
Residue.cpp:6186:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:681:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:691:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1282:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:1292:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:5133:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5142:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5154:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5163:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5175:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5184:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5196:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5205:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5217:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5226:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5238:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5247:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5306:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5315:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6204:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6213:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6225:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6234:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6246:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6255:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6267:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6276:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6288:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6297:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6309:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6318:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6445:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6454:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
In file included from Utilities.h:13:0,
from Residue.h:12,
from Residue.cpp:1:
nrutil.h: At global scope:
nrutil.h:38:21: warning: 'iminarg2' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:38:12: warning: 'iminarg1' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:34:21: warning: 'imaxarg2' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:34:12: warning: 'imaxarg1' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:30:22: warning: 'lminarg2' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:30:13: warning: 'lminarg1' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:26:22: warning: 'lmaxarg2' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:26:13: warning: 'lmaxarg1' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:22:22: warning: 'minarg2' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:22:14: warning: 'minarg1' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:18:22: warning: 'maxarg2' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:18:14: warning: 'maxarg1' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:14:24: warning: 'dminarg2' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:14:15: warning: 'dminarg1' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:10:24: warning: 'dmaxarg2' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:10:15: warning: 'dmaxarg1' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:7:15: warning: 'dsqrarg' defined but not used [-Wunused-variable]
static double dsqrarg;
^~~~~~~
In file included from Residue.h:12:0,
from Residue.cpp:1:
Utilities.h:4:14: warning: 'sqrarg' defined but not used [-Wunused-variable]
static float sqrarg;
^~~~~~
make[1]: *** [<builtin>: Residue.o] Error 1
make[1]: Leaving directory '/home/ahmed/PharmDock/src/clusterconformers'
make: *** [Makefile:3: all] Error 2```
compiling make gnu-make
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Trying to build and install PharmDock
make
But I get this make error and I don't understand what's wrong
make[1]: Entering directory '/home/ahmed/PharmDock/src/pharmdock'
make[1]: 'docking' is up to date.
make[1]: Leaving directory '/home/ahmed/PharmDock/src/pharmdock'
cd clusterconformers && make && cp clusterconformers ../../bin/genLigPharm/
make[1]: Entering directory '/home/ahmed/PharmDock/src/clusterconformers'
/home/ahmed/anaconda3/bin/x86_64-conda_cos6-linux-gnu-c++ -g3 -O3 -ffast-math -Wall -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -c -o Residue.o Residue.cpp
Residue.cpp: In member function 'void Residue::AssignElements()':
Residue.cpp:55:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:55:95: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:60:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CA2+")) == 0 ||
^
Residue.cpp:61:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CA2")) == 0 ||
^
Residue.cpp:62:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Ca2+")) == 0)
^
Residue.cpp:67:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CO2+")) == 0)
^
Residue.cpp:72:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CU2+")) == 0 ||
^
Residue.cpp:73:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CU")) == 0)
^
Residue.cpp:78:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "ZN2+")) == 0 ||
^
Residue.cpp:79:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN2")) == 0 ||
^
Residue.cpp:80:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN")) == 0)
^
Residue.cpp:85:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "NA1+")) == 0)
^
Residue.cpp:90:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "FE")) == 0 ||
^
Residue.cpp:91:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe")) == 0 ||
^
Residue.cpp:92:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE2+")) == 0 ||
^
Residue.cpp:93:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe2+")) == 0 ||
^
Residue.cpp:94:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE3+")) == 0 ||
^
Residue.cpp:95:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe3+")) == 0 ||
^
Residue.cpp:96:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE5+")) == 0 ||
^
Residue.cpp:97:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe5+")) == 0)
^
Residue.cpp:102:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:102:100: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:107:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "H")) == 0)
^
Residue.cpp:112:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "B")) == 0)
^
Residue.cpp:117:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "C")) == 0)
^
Residue.cpp:122:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "N")) == 0)
^
Residue.cpp:127:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "O")) == 0)
^
Residue.cpp:132:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "F")) == 0)
^
Residue.cpp:137:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "P")) == 0)
^
Residue.cpp:142:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "S")) == 0)
^
Residue.cpp:147:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "I")) == 0)
^
Residue.cpp:152:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMC")) == 0)
^
Residue.cpp:157:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMA")) == 0)
^
Residue.cpp:162:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMD")) == 0)
^
Residue.cpp:167:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMH")) == 0)
^
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:689:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:689:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1290:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:1290:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp:1271:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, s, charged_atom_id=-999;
^
Residue.cpp: In member function 'void Residue::AssignTorsions()':
Residue.cpp:2571:17: warning: unused variable 'ni' [-Wunused-variable]
int ni, nc, flagOneTorsion;
^~
Residue.cpp: In member function 'void Residue::FindSoma()':
Residue.cpp:2860:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if((save_counter[p] == 2 && (atom[save_store[p][0]]->element == eO && atom[save_store[p][1]]->element == eH) || (atom[save_store[p][0]]->element == eH && atom[save_store[p][1]]->element == eO)))
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Residue.cpp:2768:14: warning: unused variable 'pt' [-Wunused-variable]
torsion *pt;
^~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresCharged(int, LPE*, int*, LPE*, int*)':
Residue.cpp:3253:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:22: warning: unused variable 'm' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:25: warning: unused variable 'flag_assigned' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresHPhob(int, LPE*, int*)':
Residue.cpp:3373:16: warning: unused variable 'nhp' [-Wunused-variable]
int flag, nhp;
^~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresAro(int, LPE*, int*)':
Residue.cpp:3593:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, cr, flag;
^
Residue.cpp: In member function 'void Residue::SortTriangles(float, float, float)':
Residue.cpp:4317:12: warning: unused variable 'max_short' [-Wunused-variable]
float max_short = short_interval*100;
^~~~~~~~~
Residue.cpp: In member function 'void Residue::DetermineSizeOfLigand()':
Residue.cpp:4666:11: warning: unused variable 'fact' [-Wunused-variable]
float fact;
^~~~
Residue.cpp:4667:42: warning: unused variable 'min_i' [-Wunused-variable]
int i, j, k, m, cf, ci, jx, jy, jz, min_i;
^~~~~
Residue.cpp:4668:11: warning: unused variable 'min_dist' [-Wunused-variable]
float min_dist, d2;
^~~~~~~~
Residue.cpp:4668:21: warning: unused variable 'd2' [-Wunused-variable]
float min_dist, d2;
^~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:4956:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6185:19: warning: unused variable 'k' [-Wunused-variable]
int i, j, k, ci, lc;
^
Residue.cpp:6186:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:681:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:691:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1282:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:1292:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:5133:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5142:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5154:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5163:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5175:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5184:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5196:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5205:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5217:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5226:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5238:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5247:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5306:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5315:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6204:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6213:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6225:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6234:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6246:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6255:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6267:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6276:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6288:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6297:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6309:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6318:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6445:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6454:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
In file included from Utilities.h:13:0,
from Residue.h:12,
from Residue.cpp:1:
nrutil.h: At global scope:
nrutil.h:38:21: warning: 'iminarg2' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:38:12: warning: 'iminarg1' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:34:21: warning: 'imaxarg2' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:34:12: warning: 'imaxarg1' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:30:22: warning: 'lminarg2' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:30:13: warning: 'lminarg1' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:26:22: warning: 'lmaxarg2' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:26:13: warning: 'lmaxarg1' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:22:22: warning: 'minarg2' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:22:14: warning: 'minarg1' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:18:22: warning: 'maxarg2' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:18:14: warning: 'maxarg1' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:14:24: warning: 'dminarg2' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:14:15: warning: 'dminarg1' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:10:24: warning: 'dmaxarg2' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:10:15: warning: 'dmaxarg1' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:7:15: warning: 'dsqrarg' defined but not used [-Wunused-variable]
static double dsqrarg;
^~~~~~~
In file included from Residue.h:12:0,
from Residue.cpp:1:
Utilities.h:4:14: warning: 'sqrarg' defined but not used [-Wunused-variable]
static float sqrarg;
^~~~~~
make[1]: *** [<builtin>: Residue.o] Error 1
make[1]: Leaving directory '/home/ahmed/PharmDock/src/clusterconformers'
make: *** [Makefile:3: all] Error 2```
compiling make gnu-make
asked 13 mins ago
Ahmed SamirAhmed Samir
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Trying to build and install PharmDock
make
But I get this make error and I don't understand what's wrong
make[1]: Entering directory '/home/ahmed/PharmDock/src/pharmdock'
make[1]: 'docking' is up to date.
make[1]: Leaving directory '/home/ahmed/PharmDock/src/pharmdock'
cd clusterconformers && make && cp clusterconformers ../../bin/genLigPharm/
make[1]: Entering directory '/home/ahmed/PharmDock/src/clusterconformers'
/home/ahmed/anaconda3/bin/x86_64-conda_cos6-linux-gnu-c++ -g3 -O3 -ffast-math -Wall -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -c -o Residue.o Residue.cpp
Residue.cpp: In member function 'void Residue::AssignElements()':
Residue.cpp:55:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:55:95: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:60:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CA2+")) == 0 ||
^
Residue.cpp:61:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CA2")) == 0 ||
^
Residue.cpp:62:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Ca2+")) == 0)
^
Residue.cpp:67:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CO2+")) == 0)
^
Residue.cpp:72:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CU2+")) == 0 ||
^
Residue.cpp:73:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CU")) == 0)
^
Residue.cpp:78:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "ZN2+")) == 0 ||
^
Residue.cpp:79:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN2")) == 0 ||
^
Residue.cpp:80:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN")) == 0)
^
Residue.cpp:85:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "NA1+")) == 0)
^
Residue.cpp:90:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "FE")) == 0 ||
^
Residue.cpp:91:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe")) == 0 ||
^
Residue.cpp:92:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE2+")) == 0 ||
^
Residue.cpp:93:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe2+")) == 0 ||
^
Residue.cpp:94:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE3+")) == 0 ||
^
Residue.cpp:95:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe3+")) == 0 ||
^
Residue.cpp:96:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE5+")) == 0 ||
^
Residue.cpp:97:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe5+")) == 0)
^
Residue.cpp:102:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:102:100: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:107:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "H")) == 0)
^
Residue.cpp:112:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "B")) == 0)
^
Residue.cpp:117:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "C")) == 0)
^
Residue.cpp:122:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "N")) == 0)
^
Residue.cpp:127:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "O")) == 0)
^
Residue.cpp:132:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "F")) == 0)
^
Residue.cpp:137:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "P")) == 0)
^
Residue.cpp:142:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "S")) == 0)
^
Residue.cpp:147:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "I")) == 0)
^
Residue.cpp:152:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMC")) == 0)
^
Residue.cpp:157:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMA")) == 0)
^
Residue.cpp:162:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMD")) == 0)
^
Residue.cpp:167:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMH")) == 0)
^
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:689:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:689:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1290:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:1290:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp:1271:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, s, charged_atom_id=-999;
^
Residue.cpp: In member function 'void Residue::AssignTorsions()':
Residue.cpp:2571:17: warning: unused variable 'ni' [-Wunused-variable]
int ni, nc, flagOneTorsion;
^~
Residue.cpp: In member function 'void Residue::FindSoma()':
Residue.cpp:2860:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if((save_counter[p] == 2 && (atom[save_store[p][0]]->element == eO && atom[save_store[p][1]]->element == eH) || (atom[save_store[p][0]]->element == eH && atom[save_store[p][1]]->element == eO)))
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Residue.cpp:2768:14: warning: unused variable 'pt' [-Wunused-variable]
torsion *pt;
^~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresCharged(int, LPE*, int*, LPE*, int*)':
Residue.cpp:3253:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:22: warning: unused variable 'm' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:25: warning: unused variable 'flag_assigned' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresHPhob(int, LPE*, int*)':
Residue.cpp:3373:16: warning: unused variable 'nhp' [-Wunused-variable]
int flag, nhp;
^~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresAro(int, LPE*, int*)':
Residue.cpp:3593:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, cr, flag;
^
Residue.cpp: In member function 'void Residue::SortTriangles(float, float, float)':
Residue.cpp:4317:12: warning: unused variable 'max_short' [-Wunused-variable]
float max_short = short_interval*100;
^~~~~~~~~
Residue.cpp: In member function 'void Residue::DetermineSizeOfLigand()':
Residue.cpp:4666:11: warning: unused variable 'fact' [-Wunused-variable]
float fact;
^~~~
Residue.cpp:4667:42: warning: unused variable 'min_i' [-Wunused-variable]
int i, j, k, m, cf, ci, jx, jy, jz, min_i;
^~~~~
Residue.cpp:4668:11: warning: unused variable 'min_dist' [-Wunused-variable]
float min_dist, d2;
^~~~~~~~
Residue.cpp:4668:21: warning: unused variable 'd2' [-Wunused-variable]
float min_dist, d2;
^~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:4956:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6185:19: warning: unused variable 'k' [-Wunused-variable]
int i, j, k, ci, lc;
^
Residue.cpp:6186:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:681:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:691:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1282:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:1292:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:5133:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5142:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5154:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5163:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5175:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5184:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5196:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5205:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5217:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5226:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5238:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5247:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5306:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5315:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6204:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6213:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6225:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6234:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6246:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6255:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6267:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6276:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6288:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6297:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6309:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6318:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6445:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6454:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
In file included from Utilities.h:13:0,
from Residue.h:12,
from Residue.cpp:1:
nrutil.h: At global scope:
nrutil.h:38:21: warning: 'iminarg2' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:38:12: warning: 'iminarg1' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:34:21: warning: 'imaxarg2' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:34:12: warning: 'imaxarg1' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:30:22: warning: 'lminarg2' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:30:13: warning: 'lminarg1' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:26:22: warning: 'lmaxarg2' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:26:13: warning: 'lmaxarg1' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:22:22: warning: 'minarg2' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:22:14: warning: 'minarg1' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:18:22: warning: 'maxarg2' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:18:14: warning: 'maxarg1' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:14:24: warning: 'dminarg2' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:14:15: warning: 'dminarg1' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:10:24: warning: 'dmaxarg2' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:10:15: warning: 'dmaxarg1' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:7:15: warning: 'dsqrarg' defined but not used [-Wunused-variable]
static double dsqrarg;
^~~~~~~
In file included from Residue.h:12:0,
from Residue.cpp:1:
Utilities.h:4:14: warning: 'sqrarg' defined but not used [-Wunused-variable]
static float sqrarg;
^~~~~~
make[1]: *** [<builtin>: Residue.o] Error 1
make[1]: Leaving directory '/home/ahmed/PharmDock/src/clusterconformers'
make: *** [Makefile:3: all] Error 2```
compiling make gnu-make
asked 13 mins ago
Ahmed SamirAhmed Samir
1
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Trying to build and install PharmDock
make
But I get this make error and I don't understand what's wrong
make[1]: Entering directory '/home/ahmed/PharmDock/src/pharmdock'
make[1]: 'docking' is up to date.
make[1]: Leaving directory '/home/ahmed/PharmDock/src/pharmdock'
cd clusterconformers && make && cp clusterconformers ../../bin/genLigPharm/
make[1]: Entering directory '/home/ahmed/PharmDock/src/clusterconformers'
/home/ahmed/anaconda3/bin/x86_64-conda_cos6-linux-gnu-c++ -g3 -O3 -ffast-math -Wall -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -c -o Residue.o Residue.cpp
Residue.cpp: In member function 'void Residue::AssignElements()':
Residue.cpp:55:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:55:95: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
if((n=util.strindex(atom[i]->name, "Cl")) == 0 || (n=util.strindex(atom[i]->name, "CL")) == 0)
^
Residue.cpp:60:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CA2+")) == 0 ||
^
Residue.cpp:61:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CA2")) == 0 ||
^
Residue.cpp:62:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Ca2+")) == 0)
^
Residue.cpp:67:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CO2+")) == 0)
^
Residue.cpp:72:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "CU2+")) == 0 ||
^
Residue.cpp:73:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "CU")) == 0)
^
Residue.cpp:78:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "ZN2+")) == 0 ||
^
Residue.cpp:79:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN2")) == 0 ||
^
Residue.cpp:80:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "ZN")) == 0)
^
Residue.cpp:85:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "NA1+")) == 0)
^
Residue.cpp:90:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "FE")) == 0 ||
^
Residue.cpp:91:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe")) == 0 ||
^
Residue.cpp:92:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE2+")) == 0 ||
^
Residue.cpp:93:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe2+")) == 0 ||
^
Residue.cpp:94:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE3+")) == 0 ||
^
Residue.cpp:95:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe3+")) == 0 ||
^
Residue.cpp:96:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "FE5+")) == 0 ||
^
Residue.cpp:97:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
(n=util.strindex(atom[i]->name, "Fe5+")) == 0)
^
Residue.cpp:102:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:102:100: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "Br")) == 0 || (n=util.strindex(atom[i]->name, "BR")) == 0)
^
Residue.cpp:107:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "H")) == 0)
^
Residue.cpp:112:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "B")) == 0)
^
Residue.cpp:117:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "C")) == 0)
^
Residue.cpp:122:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "N")) == 0)
^
Residue.cpp:127:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "O")) == 0)
^
Residue.cpp:132:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "F")) == 0)
^
Residue.cpp:137:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "P")) == 0)
^
Residue.cpp:142:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "S")) == 0)
^
Residue.cpp:147:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "I")) == 0)
^
Residue.cpp:152:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMC")) == 0)
^
Residue.cpp:157:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMA")) == 0)
^
Residue.cpp:162:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMD")) == 0)
^
Residue.cpp:167:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
else if((n=util.strindex(atom[i]->name, "LMH")) == 0)
^
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:689:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:689:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1290:28: error: invalid conversion from 'char' to 'const char*' [-fpermissive]
sprintf(line, '');
^
In file included from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/features.h:356:0,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/os_defines.h:39,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/x86_64-conda_cos6-linux-gnu/bits/c++config.h:533,
from /home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/include/c++/7.2.0/string:38,
from Residue.h:7,
from Residue.cpp:1:
/home/ahmed/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/include/bits/stdio2.h:32:1: note: initializing argument 2 of 'int sprintf(char*, const char*, ...)'
__NTH (sprintf (char *__restrict __s, __const char *__restrict __fmt, ...))
^
Residue.cpp:1290:28: warning: null argument where non-null required (argument 2) [-Wnonnull]
sprintf(line, '');
^
Residue.cpp:1271:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, s, charged_atom_id=-999;
^
Residue.cpp: In member function 'void Residue::AssignTorsions()':
Residue.cpp:2571:17: warning: unused variable 'ni' [-Wunused-variable]
int ni, nc, flagOneTorsion;
^~
Residue.cpp: In member function 'void Residue::FindSoma()':
Residue.cpp:2860:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if((save_counter[p] == 2 && (atom[save_store[p][0]]->element == eO && atom[save_store[p][1]]->element == eH) || (atom[save_store[p][0]]->element == eH && atom[save_store[p][1]]->element == eO)))
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Residue.cpp:2768:14: warning: unused variable 'pt' [-Wunused-variable]
torsion *pt;
^~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresCharged(int, LPE*, int*, LPE*, int*)':
Residue.cpp:3253:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:22: warning: unused variable 'm' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^
Residue.cpp:3253:25: warning: unused variable 'flag_assigned' [-Wunused-variable]
int i, j, k, m, flag_assigned;
^~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresHPhob(int, LPE*, int*)':
Residue.cpp:3373:16: warning: unused variable 'nhp' [-Wunused-variable]
int flag, nhp;
^~~
Residue.cpp: In member function 'void Residue::AssignLigandPharmacophoresAro(int, LPE*, int*)':
Residue.cpp:3593:16: warning: unused variable 'j' [-Wunused-variable]
int i, j, k, cr, flag;
^
Residue.cpp: In member function 'void Residue::SortTriangles(float, float, float)':
Residue.cpp:4317:12: warning: unused variable 'max_short' [-Wunused-variable]
float max_short = short_interval*100;
^~~~~~~~~
Residue.cpp: In member function 'void Residue::DetermineSizeOfLigand()':
Residue.cpp:4666:11: warning: unused variable 'fact' [-Wunused-variable]
float fact;
^~~~
Residue.cpp:4667:42: warning: unused variable 'min_i' [-Wunused-variable]
int i, j, k, m, cf, ci, jx, jy, jz, min_i;
^~~~~
Residue.cpp:4668:11: warning: unused variable 'min_dist' [-Wunused-variable]
float min_dist, d2;
^~~~~~~~
Residue.cpp:4668:21: warning: unused variable 'd2' [-Wunused-variable]
float min_dist, d2;
^~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:4956:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6185:19: warning: unused variable 'k' [-Wunused-variable]
int i, j, k, ci, lc;
^
Residue.cpp:6186:13: warning: unused variable 'filename_out' [-Wunused-variable]
char filename_out[kString], line[kString];
^~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignRingsPython(char*)':
Residue.cpp:681:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:691:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::AssignFormalChargedGroups(char*)':
Residue.cpp:1282:11: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(comm1);
~~~~~~^~~~~~~
Residue.cpp:1292:13: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 254, fi);
~~~~~^~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteMol2(int, char*, char*)':
Residue.cpp:5133:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5142:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5154:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5163:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5175:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5184:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5196:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5205:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5217:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5226:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5238:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5247:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5306:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:5315:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp: In member function 'void Residue::WriteNewMol2(int, char*, char*)':
Residue.cpp:6204:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6213:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6225:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6234:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6246:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6255:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6267:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6276:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6288:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6297:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6309:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6318:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6445:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
Residue.cpp:6454:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, kString, fi);
~~~~~^~~~~~~~~~~~~~~~~~~
In file included from Utilities.h:13:0,
from Residue.h:12,
from Residue.cpp:1:
nrutil.h: At global scope:
nrutil.h:38:21: warning: 'iminarg2' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:38:12: warning: 'iminarg1' defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
nrutil.h:34:21: warning: 'imaxarg2' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:34:12: warning: 'imaxarg1' defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
nrutil.h:30:22: warning: 'lminarg2' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:30:13: warning: 'lminarg1' defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
nrutil.h:26:22: warning: 'lmaxarg2' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:26:13: warning: 'lmaxarg1' defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
nrutil.h:22:22: warning: 'minarg2' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:22:14: warning: 'minarg1' defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
nrutil.h:18:22: warning: 'maxarg2' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:18:14: warning: 'maxarg1' defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
nrutil.h:14:24: warning: 'dminarg2' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:14:15: warning: 'dminarg1' defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
nrutil.h:10:24: warning: 'dmaxarg2' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:10:15: warning: 'dmaxarg1' defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
nrutil.h:7:15: warning: 'dsqrarg' defined but not used [-Wunused-variable]
static double dsqrarg;
^~~~~~~
In file included from Residue.h:12:0,
from Residue.cpp:1:
Utilities.h:4:14: warning: 'sqrarg' defined but not used [-Wunused-variable]
static float sqrarg;
^~~~~~
make[1]: *** [<builtin>: Residue.o] Error 1
make[1]: Leaving directory '/home/ahmed/PharmDock/src/clusterconformers'
make: *** [Makefile:3: all] Error 2```
compiling make gnu-make
compiling make gnu-make
asked 13 mins ago
Ahmed SamirAhmed Samir
1
New contributor
Ahmed Samir is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
asked 13 mins ago
Ahmed SamirAhmed Samir
1
New contributor
Ahmed Samir is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
asked 13 mins ago
Ahmed SamirAhmed Samir
1
New contributor
Ahmed Samir is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
asked 13 mins ago
Ahmed SamirAhmed Samir
1
asked 13 mins ago
Ahmed SamirAhmed Samir
1
1
New contributor
Ahmed Samir is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
New contributor
Ahmed Samir is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
Ahmed Samir is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
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StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
