dnf error conflicting packages between i686 and x86_64












2















I am getting a series of errors similar to this



file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64


when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.



Full errors for a current dnf update:



Error: Transaction check error:
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64

Error Summary
-------------


Error from dnf install [anything]:



Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
Traceback (most recent call last):
File "/bin/dnf", line 58, in <module>
main.user_main(sys.argv[1:], exit_code=True)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
errcode = main(args)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
return _main(base, args, cli_class, option_parser_class)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
return cli_run(cli, base)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
cli.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
return self.command.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
self.base.install(pkg_spec, strict=strict, forms=forms)
File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
subj._is_arch_specified(self.sack):
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
q = self._nevra_to_filters(sack.query(), nevra)
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
query._filterm(*flags, **{name + '__glob': attr})
File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
return super(Query, self)._filterm(*args, **nargs)
AttributeError: 'super' object has no attribute '_filterm'


Errors from the end of dnf history info 52 (the update before the power failure):



Scriptlet output:
1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
3 error: cannot open Packages index using db5 - (-30969)
4 error: cannot open Packages database in /var/lib/rpm
5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
6 error: cannot open Packages index using db5 - (-30969)
7 error: cannot open Packages database in /var/lib/rpm
8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
9 error: cannot open Packages index using db5 - (-30969)
10 error: cannot open Packages database in /var/lib/rpm
11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
12 error: cannot open Packages index using db5 - (-30969)
13 error: cannot open Packages database in /var/lib/rpm
14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security









share|improve this question





























    2















    I am getting a series of errors similar to this



    file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64


    when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.



    Full errors for a current dnf update:



    Error: Transaction check error:
    file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
    file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
    file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
    file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
    file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
    file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
    file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
    file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
    file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
    file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
    file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
    file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
    file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
    file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
    file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
    file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
    file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
    file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
    file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
    file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
    file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
    file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
    file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
    file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
    file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
    file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
    file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
    file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
    file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64

    Error Summary
    -------------


    Error from dnf install [anything]:



    Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
    Traceback (most recent call last):
    File "/bin/dnf", line 58, in <module>
    main.user_main(sys.argv[1:], exit_code=True)
    File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
    errcode = main(args)
    File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
    return _main(base, args, cli_class, option_parser_class)
    File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
    return cli_run(cli, base)
    File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
    cli.run()
    File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
    return self.command.run()
    File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
    self.base.install(pkg_spec, strict=strict, forms=forms)
    File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
    subj._is_arch_specified(self.sack):
    File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
    q = self._nevra_to_filters(sack.query(), nevra)
    File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
    query._filterm(*flags, **{name + '__glob': attr})
    File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
    return super(Query, self)._filterm(*args, **nargs)
    AttributeError: 'super' object has no attribute '_filterm'


    Errors from the end of dnf history info 52 (the update before the power failure):



    Scriptlet output:
    1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
    2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
    3 error: cannot open Packages index using db5 - (-30969)
    4 error: cannot open Packages database in /var/lib/rpm
    5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
    6 error: cannot open Packages index using db5 - (-30969)
    7 error: cannot open Packages database in /var/lib/rpm
    8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
    9 error: cannot open Packages index using db5 - (-30969)
    10 error: cannot open Packages database in /var/lib/rpm
    11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
    12 error: cannot open Packages index using db5 - (-30969)
    13 error: cannot open Packages database in /var/lib/rpm
    14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security









    share|improve this question



























      2












      2








      2








      I am getting a series of errors similar to this



      file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64


      when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.



      Full errors for a current dnf update:



      Error: Transaction check error:
      file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
      file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
      file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
      file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
      file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
      file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
      file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
      file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
      file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
      file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
      file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
      file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
      file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
      file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
      file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
      file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
      file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64

      Error Summary
      -------------


      Error from dnf install [anything]:



      Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
      Traceback (most recent call last):
      File "/bin/dnf", line 58, in <module>
      main.user_main(sys.argv[1:], exit_code=True)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
      errcode = main(args)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
      return _main(base, args, cli_class, option_parser_class)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
      return cli_run(cli, base)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
      cli.run()
      File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
      return self.command.run()
      File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
      self.base.install(pkg_spec, strict=strict, forms=forms)
      File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
      subj._is_arch_specified(self.sack):
      File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
      q = self._nevra_to_filters(sack.query(), nevra)
      File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
      query._filterm(*flags, **{name + '__glob': attr})
      File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
      return super(Query, self)._filterm(*args, **nargs)
      AttributeError: 'super' object has no attribute '_filterm'


      Errors from the end of dnf history info 52 (the update before the power failure):



      Scriptlet output:
      1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
      2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      3 error: cannot open Packages index using db5 - (-30969)
      4 error: cannot open Packages database in /var/lib/rpm
      5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      6 error: cannot open Packages index using db5 - (-30969)
      7 error: cannot open Packages database in /var/lib/rpm
      8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      9 error: cannot open Packages index using db5 - (-30969)
      10 error: cannot open Packages database in /var/lib/rpm
      11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      12 error: cannot open Packages index using db5 - (-30969)
      13 error: cannot open Packages database in /var/lib/rpm
      14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security









      share|improve this question
















      I am getting a series of errors similar to this



      file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64


      when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.



      Full errors for a current dnf update:



      Error: Transaction check error:
      file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
      file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
      file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
      file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
      file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
      file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
      file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
      file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
      file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
      file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
      file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
      file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
      file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
      file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
      file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
      file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
      file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
      file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
      file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
      file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
      file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64

      Error Summary
      -------------


      Error from dnf install [anything]:



      Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
      Traceback (most recent call last):
      File "/bin/dnf", line 58, in <module>
      main.user_main(sys.argv[1:], exit_code=True)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
      errcode = main(args)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
      return _main(base, args, cli_class, option_parser_class)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
      return cli_run(cli, base)
      File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
      cli.run()
      File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
      return self.command.run()
      File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
      self.base.install(pkg_spec, strict=strict, forms=forms)
      File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
      subj._is_arch_specified(self.sack):
      File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
      q = self._nevra_to_filters(sack.query(), nevra)
      File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
      query._filterm(*flags, **{name + '__glob': attr})
      File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
      return super(Query, self)._filterm(*args, **nargs)
      AttributeError: 'super' object has no attribute '_filterm'


      Errors from the end of dnf history info 52 (the update before the power failure):



      Scriptlet output:
      1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
      2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      3 error: cannot open Packages index using db5 - (-30969)
      4 error: cannot open Packages database in /var/lib/rpm
      5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      6 error: cannot open Packages index using db5 - (-30969)
      7 error: cannot open Packages database in /var/lib/rpm
      8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      9 error: cannot open Packages index using db5 - (-30969)
      10 error: cannot open Packages database in /var/lib/rpm
      11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
      12 error: cannot open Packages index using db5 - (-30969)
      13 error: cannot open Packages database in /var/lib/rpm
      14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security






      fedora dnf cpu-architecture






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Sep 5 '17 at 1:41









      Jeff Schaller

      43.1k1159138




      43.1k1159138










      asked Sep 5 '17 at 1:23









      lvclvc

      20628




      20628






















          3 Answers
          3






          active

          oldest

          votes


















          4














          The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.



          In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:



          file /usr/share/doc/glibc/NEWS from install of 
          glibc-2.25-10.fc26.i686 conflicts with file from package
          glibc-2.25-7.fc26.x86_64


          Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.



          The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)



          If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.



          If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.



          If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.






          share|improve this answer


























          • dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

            – lvc
            Sep 6 '17 at 9:26






          • 1





            Sorry, dnf remove --duplicates to remove. I'll add that.

            – mattdm
            Sep 6 '17 at 15:55











          • dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

            – lvc
            Sep 7 '17 at 2:42











          • Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

            – mattdm
            Sep 7 '17 at 5:44











          • rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

            – lvc
            Sep 7 '17 at 13:39



















          0














          I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.






          share|improve this answer































            0














            after every package(uptodate) ready,



            vi /etc/dnf/dnf.conf



            [main]
            gpgcheck=1
            installonly_limit=3
            clean_requirements_on_remove=True
            exactarch=1 ##<--add line this


            after save to $(prompt)



            dnf clean all



            dnf update






            share|improve this answer








            New contributor




            Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
            Check out our Code of Conduct.





















            • would be pleased, paste[solved]; thanks

              – Jungsuep Yoon
              23 mins ago











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            3 Answers
            3






            active

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            3 Answers
            3






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            4














            The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.



            In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:



            file /usr/share/doc/glibc/NEWS from install of 
            glibc-2.25-10.fc26.i686 conflicts with file from package
            glibc-2.25-7.fc26.x86_64


            Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.



            The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)



            If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.



            If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.



            If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.






            share|improve this answer


























            • dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

              – lvc
              Sep 6 '17 at 9:26






            • 1





              Sorry, dnf remove --duplicates to remove. I'll add that.

              – mattdm
              Sep 6 '17 at 15:55











            • dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

              – lvc
              Sep 7 '17 at 2:42











            • Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

              – mattdm
              Sep 7 '17 at 5:44











            • rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

              – lvc
              Sep 7 '17 at 13:39
















            4














            The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.



            In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:



            file /usr/share/doc/glibc/NEWS from install of 
            glibc-2.25-10.fc26.i686 conflicts with file from package
            glibc-2.25-7.fc26.x86_64


            Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.



            The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)



            If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.



            If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.



            If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.






            share|improve this answer


























            • dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

              – lvc
              Sep 6 '17 at 9:26






            • 1





              Sorry, dnf remove --duplicates to remove. I'll add that.

              – mattdm
              Sep 6 '17 at 15:55











            • dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

              – lvc
              Sep 7 '17 at 2:42











            • Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

              – mattdm
              Sep 7 '17 at 5:44











            • rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

              – lvc
              Sep 7 '17 at 13:39














            4












            4








            4







            The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.



            In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:



            file /usr/share/doc/glibc/NEWS from install of 
            glibc-2.25-10.fc26.i686 conflicts with file from package
            glibc-2.25-7.fc26.x86_64


            Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.



            The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)



            If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.



            If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.



            If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.






            share|improve this answer















            The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.



            In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:



            file /usr/share/doc/glibc/NEWS from install of 
            glibc-2.25-10.fc26.i686 conflicts with file from package
            glibc-2.25-7.fc26.x86_64


            Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.



            The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)



            If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.



            If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.



            If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.







            share|improve this answer














            share|improve this answer



            share|improve this answer








            edited Sep 6 '17 at 15:58

























            answered Sep 5 '17 at 12:19









            mattdmmattdm

            28.8k1372116




            28.8k1372116













            • dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

              – lvc
              Sep 6 '17 at 9:26






            • 1





              Sorry, dnf remove --duplicates to remove. I'll add that.

              – mattdm
              Sep 6 '17 at 15:55











            • dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

              – lvc
              Sep 7 '17 at 2:42











            • Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

              – mattdm
              Sep 7 '17 at 5:44











            • rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

              – lvc
              Sep 7 '17 at 13:39



















            • dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

              – lvc
              Sep 6 '17 at 9:26






            • 1





              Sorry, dnf remove --duplicates to remove. I'll add that.

              – mattdm
              Sep 6 '17 at 15:55











            • dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

              – lvc
              Sep 7 '17 at 2:42











            • Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

              – mattdm
              Sep 7 '17 at 5:44











            • rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

              – lvc
              Sep 7 '17 at 13:39

















            dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

            – lvc
            Sep 6 '17 at 9:26





            dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?

            – lvc
            Sep 6 '17 at 9:26




            1




            1





            Sorry, dnf remove --duplicates to remove. I'll add that.

            – mattdm
            Sep 6 '17 at 15:55





            Sorry, dnf remove --duplicates to remove. I'll add that.

            – mattdm
            Sep 6 '17 at 15:55













            dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

            – lvc
            Sep 7 '17 at 2:42





            dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.

            – lvc
            Sep 7 '17 at 2:42













            Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

            – mattdm
            Sep 7 '17 at 5:44





            Hmmm. Given the db errors, can you try sudo rpm --rebuilddb? Should run with no errors and may fix the problem.

            – mattdm
            Sep 7 '17 at 5:44













            rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

            – lvc
            Sep 7 '17 at 13:39





            rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?

            – lvc
            Sep 7 '17 at 13:39













            0














            I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.






            share|improve this answer




























              0














              I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.






              share|improve this answer


























                0












                0








                0







                I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.






                share|improve this answer













                I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.







                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Sep 12 '17 at 10:11









                lvclvc

                20628




                20628























                    0














                    after every package(uptodate) ready,



                    vi /etc/dnf/dnf.conf



                    [main]
                    gpgcheck=1
                    installonly_limit=3
                    clean_requirements_on_remove=True
                    exactarch=1 ##<--add line this


                    after save to $(prompt)



                    dnf clean all



                    dnf update






                    share|improve this answer








                    New contributor




                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.





















                    • would be pleased, paste[solved]; thanks

                      – Jungsuep Yoon
                      23 mins ago
















                    0














                    after every package(uptodate) ready,



                    vi /etc/dnf/dnf.conf



                    [main]
                    gpgcheck=1
                    installonly_limit=3
                    clean_requirements_on_remove=True
                    exactarch=1 ##<--add line this


                    after save to $(prompt)



                    dnf clean all



                    dnf update






                    share|improve this answer








                    New contributor




                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.





















                    • would be pleased, paste[solved]; thanks

                      – Jungsuep Yoon
                      23 mins ago














                    0












                    0








                    0







                    after every package(uptodate) ready,



                    vi /etc/dnf/dnf.conf



                    [main]
                    gpgcheck=1
                    installonly_limit=3
                    clean_requirements_on_remove=True
                    exactarch=1 ##<--add line this


                    after save to $(prompt)



                    dnf clean all



                    dnf update






                    share|improve this answer








                    New contributor




                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.










                    after every package(uptodate) ready,



                    vi /etc/dnf/dnf.conf



                    [main]
                    gpgcheck=1
                    installonly_limit=3
                    clean_requirements_on_remove=True
                    exactarch=1 ##<--add line this


                    after save to $(prompt)



                    dnf clean all



                    dnf update







                    share|improve this answer








                    New contributor




                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.









                    share|improve this answer



                    share|improve this answer






                    New contributor




                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.









                    answered 24 mins ago









                    Jungsuep YoonJungsuep Yoon

                    11




                    11




                    New contributor




                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.





                    New contributor





                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.






                    Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
                    Check out our Code of Conduct.













                    • would be pleased, paste[solved]; thanks

                      – Jungsuep Yoon
                      23 mins ago



















                    • would be pleased, paste[solved]; thanks

                      – Jungsuep Yoon
                      23 mins ago

















                    would be pleased, paste[solved]; thanks

                    – Jungsuep Yoon
                    23 mins ago





                    would be pleased, paste[solved]; thanks

                    – Jungsuep Yoon
                    23 mins ago


















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