pdflatex from MikTex not working inside windows











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I am trying to compile some tex files into pdf files using pdflatex but it is not working. Can anyone spot what the problem is? I appreciate any kind of help. I was first trying using R but it seems that the problem is with pdflatex itself.



I just used:



pdflatex TcCLB50345390.tex


This is the error log:



This is pdfTeX, Version 3.14159265-2.6-1.40.18 (MiKTeX 2.9.6500 64-bit) (preloaded format=pdflatex 2017.12.7)  7 DEC 2017 17:11
entering extended mode
**./TcCLB50345390.tex
(TcCLB50345390.tex
LaTeX2e <2017-04-15>
Babel <3.15> and hyphenation patterns for 75 language(s) loaded.
("C:Program FilesMiKTeX 2.9texlatexbasearticle.cls"
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
("C:Program FilesMiKTeX 2.9texlatexbasesize10.clo"
File: size10.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
)
c@part=count79
c@section=count80
c@subsection=count81
c@subsubsection=count82
c@paragraph=count83
c@subparagraph=count84
c@figure=count85
c@table=count86
abovecaptionskip=skip41
belowcaptionskip=skip42
bibindent=dimen102
)
(C:UserstiagoAppDataRoamingMiKTeX2.9texlatextexshadetexshade.sty
Package: texshade 2011/05/13 LaTeX TeXshade (v1.24)

Package `texshade', Version 1.24 of 2011/12/01.
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Package: color 2016/07/10 v1.1e Standard LaTeX Color (DPC)

("C:Program FilesMiKTeX 2.9texlatexgraphics-cfgcolor.cfg"
File: color.cfg 2016/01/02 v1.6 sample color configuration
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Package color Info: Driver file: dvips.def on input line 147.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defdvips.def"
File: dvips.def 2017/06/20 v3.1d Graphics/color driver for dvips
)
("C:Program FilesMiKTeX 2.9texlatexgraphicsdvipsnam.def"
File: dvipsnam.def 2016/06/17 v3.0m Driver-dependent file (DPC,SPQR)
))
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Package: graphics 2017/06/25 v1.2c Standard LaTeX Graphics (DPC,SPQR)

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Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
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File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
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Package graphics Info: Driver file: pdftex.def on input line 99.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defpdftex.def"
File: pdftex.def 2017/06/24 v1.0g Graphics/color driver for pdftex
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structurefile=read1
featurefile=write3
alignfile=read2
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exp@rtfile=write4

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Package: amssymb 2013/01/14 v3.01 AMS font symbols

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Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
@emptytoks=toks14
symAMSa=mathgroup4
symAMSb=mathgroup5
LaTeX Font Info: Overwriting math alphabet `mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
))
symalphahelix=mathgroup6
loopcount=count87
innerloopcount=count88
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seq@count=count90
killseq@count=count91
seq@percent=count92
res@count=count93
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pos@count=count95
res@perline=count96
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cons@count=count98
total@count=count99
temp@count=count100
triple@count=count101
temp@@count=count102
pos@sum=count103
box@width=skip43
name@width=skip44
box@depth=skip45
width@tmp=skip46
box@height=skip47
number@width=skip48
line@stretch=skip49
center@fill=skip50
arrow@width=skip51
arrow@height=skip52
rule@thick=skip53
arrow@thick=skip54
logo@height=skip55
equal@width=skip56
equal@tmp=skip57
equal@height=skip58
temp@@length=skip59
vspace@legend=skip60
hspace@legend=skip61
Package color Info: Redefining color LightGray on input line 1704.
Package color Info: Redefining color LightLightGray on input line 1805.
Package color Info: Redefining color LightLightLightGray on input line 1907.
)
No file TcCLB50345390.aux.
openout1 = `TcCLB50345390.aux'.

LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
(C:UserstiagoAppDataRoamingMiKTeX2.9texcontextbasesupp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
scratchcounter=count104
scratchdimen=dimen103
scratchbox=box26
nofMPsegments=count105
nofMParguments=count106
everyMPshowfont=toks15
MPscratchCnt=count107
MPscratchDim=dimen104
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Package: epstopdf-base 2016/05/15 v2.6 Base part for package epstopdf

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Package: infwarerr 2016/05/16 v1.4 Providing info/warning/error messages (HO)
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Package: grfext 2016/05/16 v1.2 Manage graphics extensions (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekkvdefinekeys.sty"
Package: kvdefinekeys 2016/05/16 v1.4 Define keys (HO)

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Package: ltxcmds 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
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Package: kvoptions 2016/05/16 v3.12 Key value format for package options (HO)

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Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
KV@toks@=toks17
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Package: kvsetkeys 2016/05/16 v1.17 Key value parser (HO)

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Package: etexcmds 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)

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Package: ifluatex 2016/05/16 v1.4 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
)
Package etexcmds Info: Could not find expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined expanded.
(etexcmds) In the latter case, load this package earlier.
)))
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Package: pdftexcmds 2017/03/19 v0.25 Utility functions of pdfTeX for LuaTeX (HO
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("C:Program FilesMiKTeX 2.9texgenericoberdiekifpdf.sty"
Package: ifpdf 2017/03/15 v3.2 Provides the ifpdf switch
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Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: pdf@primitive is available.
Package pdftexcmds Info: pdf@ifprimitive is available.
Package pdftexcmds Info: pdfdraftmode found.
)
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
38.
Package grfext Info: Graphics extension search list:
(grfext) [.pdf,.png,.jpg,.mps,.jpeg,.jbig2,.jb2,.PDF,.PNG,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) AppendGraphicsExtensions on input line 456.
)
(C:/Users/tiago/AppData/Local/Temp/Rtmp4KSpsc/seq35082e2523e2.fasta: . . . . .
. . . . . . . . [1
Non-PDF special ignored!

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! TeX capacity exceeded, sorry [input stack size=5000].
<to be read again>
current@color
l.37 end{texshade}

If you really absolutely need more capacity,
you can ask a wizard to enlarge me.


Here is how much of TeX's memory you used:
6659 strings out of 493312
77084 string characters out of 3138899
293316 words of memory out of 3000000
10209 multiletter control sequences out of 15000+200000
4281 words of font info for 17 fonts, out of 3000000 for 9000
1141 hyphenation exceptions out of 8191
5000i,5n,57p,431b,1310s stack positions out of 5000i,500n,10000p,200000b,50000s
! ==> Fatal error occurred, no output PDF file produced!









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  • Welcome. The problem is that the document is "too large" (some operation eats up the TeX memory).
    – TeXnician
    Dec 7 '17 at 19:32










  • There is any way to increase TeX memory?
    – Tiago Bruno
    Dec 7 '17 at 19:39












  • You were completely right. I used a really small file as test and worked normally. Can I overcome the issue to print the big files?
    – Tiago Bruno
    Dec 7 '17 at 19:44










  • You might try LuaLaTeX. Or maybe search this site, we already have similar questions.
    – TeXnician
    Dec 7 '17 at 19:46












  • input stack overflows normally indicate a bug in the code.
    – Ulrike Fischer
    Dec 7 '17 at 20:04















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I am trying to compile some tex files into pdf files using pdflatex but it is not working. Can anyone spot what the problem is? I appreciate any kind of help. I was first trying using R but it seems that the problem is with pdflatex itself.



I just used:



pdflatex TcCLB50345390.tex


This is the error log:



This is pdfTeX, Version 3.14159265-2.6-1.40.18 (MiKTeX 2.9.6500 64-bit) (preloaded format=pdflatex 2017.12.7)  7 DEC 2017 17:11
entering extended mode
**./TcCLB50345390.tex
(TcCLB50345390.tex
LaTeX2e <2017-04-15>
Babel <3.15> and hyphenation patterns for 75 language(s) loaded.
("C:Program FilesMiKTeX 2.9texlatexbasearticle.cls"
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
("C:Program FilesMiKTeX 2.9texlatexbasesize10.clo"
File: size10.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
)
c@part=count79
c@section=count80
c@subsection=count81
c@subsubsection=count82
c@paragraph=count83
c@subparagraph=count84
c@figure=count85
c@table=count86
abovecaptionskip=skip41
belowcaptionskip=skip42
bibindent=dimen102
)
(C:UserstiagoAppDataRoamingMiKTeX2.9texlatextexshadetexshade.sty
Package: texshade 2011/05/13 LaTeX TeXshade (v1.24)

Package `texshade', Version 1.24 of 2011/12/01.
("C:Program FilesMiKTeX 2.9texlatexgraphicscolor.sty"
Package: color 2016/07/10 v1.1e Standard LaTeX Color (DPC)

("C:Program FilesMiKTeX 2.9texlatexgraphics-cfgcolor.cfg"
File: color.cfg 2016/01/02 v1.6 sample color configuration
)
Package color Info: Driver file: dvips.def on input line 147.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defdvips.def"
File: dvips.def 2017/06/20 v3.1d Graphics/color driver for dvips
)
("C:Program FilesMiKTeX 2.9texlatexgraphicsdvipsnam.def"
File: dvipsnam.def 2016/06/17 v3.0m Driver-dependent file (DPC,SPQR)
))
("C:Program FilesMiKTeX 2.9texlatexgraphicsgraphics.sty"
Package: graphics 2017/06/25 v1.2c Standard LaTeX Graphics (DPC,SPQR)

("C:Program FilesMiKTeX 2.9texlatexgraphicstrig.sty"
Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
)
("C:Program FilesMiKTeX 2.9texlatexgraphics-cfggraphics.cfg"
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 99.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defpdftex.def"
File: pdftex.def 2017/06/24 v1.0g Graphics/color driver for pdftex
))
structurefile=read1
featurefile=write3
alignfile=read2
sublogofile=read3
exp@rtfile=write4

("C:Program FilesMiKTeX 2.9texlatexamsfontsamssymb.sty"
Package: amssymb 2013/01/14 v3.01 AMS font symbols

("C:Program FilesMiKTeX 2.9texlatexamsfontsamsfonts.sty"
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
@emptytoks=toks14
symAMSa=mathgroup4
symAMSb=mathgroup5
LaTeX Font Info: Overwriting math alphabet `mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
))
symalphahelix=mathgroup6
loopcount=count87
innerloopcount=count88
outerloopcount=count89
seq@count=count90
killseq@count=count91
seq@percent=count92
res@count=count93
seq@pointer=count94
pos@count=count95
res@perline=count96
end@count=count97
cons@count=count98
total@count=count99
temp@count=count100
triple@count=count101
temp@@count=count102
pos@sum=count103
box@width=skip43
name@width=skip44
box@depth=skip45
width@tmp=skip46
box@height=skip47
number@width=skip48
line@stretch=skip49
center@fill=skip50
arrow@width=skip51
arrow@height=skip52
rule@thick=skip53
arrow@thick=skip54
logo@height=skip55
equal@width=skip56
equal@tmp=skip57
equal@height=skip58
temp@@length=skip59
vspace@legend=skip60
hspace@legend=skip61
Package color Info: Redefining color LightGray on input line 1704.
Package color Info: Redefining color LightLightGray on input line 1805.
Package color Info: Redefining color LightLightLightGray on input line 1907.
)
No file TcCLB50345390.aux.
openout1 = `TcCLB50345390.aux'.

LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
(C:UserstiagoAppDataRoamingMiKTeX2.9texcontextbasesupp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
scratchcounter=count104
scratchdimen=dimen103
scratchbox=box26
nofMPsegments=count105
nofMParguments=count106
everyMPshowfont=toks15
MPscratchCnt=count107
MPscratchDim=dimen104
MPnumerator=count108
makeMPintoPDFobject=count109
everyMPtoPDFconversion=toks16
) ("C:Program FilesMiKTeX 2.9texlatexoberdiekepstopdf-base.sty"
Package: epstopdf-base 2016/05/15 v2.6 Base part for package epstopdf

("C:Program FilesMiKTeX 2.9texgenericoberdiekinfwarerr.sty"
Package: infwarerr 2016/05/16 v1.4 Providing info/warning/error messages (HO)
)
("C:Program FilesMiKTeX 2.9texlatexoberdiekgrfext.sty"
Package: grfext 2016/05/16 v1.2 Manage graphics extensions (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekkvdefinekeys.sty"
Package: kvdefinekeys 2016/05/16 v1.4 Define keys (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekltxcmds.sty"
Package: ltxcmds 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
)))
("C:Program FilesMiKTeX 2.9texlatexoberdiekkvoptions.sty"
Package: kvoptions 2016/05/16 v3.12 Key value format for package options (HO)

("C:Program FilesMiKTeX 2.9texlatexgraphicskeyval.sty"
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
KV@toks@=toks17
)
("C:Program FilesMiKTeX 2.9texgenericoberdiekkvsetkeys.sty"
Package: kvsetkeys 2016/05/16 v1.17 Key value parser (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdieketexcmds.sty"
Package: etexcmds 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekifluatex.sty"
Package: ifluatex 2016/05/16 v1.4 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
)
Package etexcmds Info: Could not find expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined expanded.
(etexcmds) In the latter case, load this package earlier.
)))
("C:Program FilesMiKTeX 2.9texgenericoberdiekpdftexcmds.sty"
Package: pdftexcmds 2017/03/19 v0.25 Utility functions of pdfTeX for LuaTeX (HO
)

("C:Program FilesMiKTeX 2.9texgenericoberdiekifpdf.sty"
Package: ifpdf 2017/03/15 v3.2 Provides the ifpdf switch
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: pdf@primitive is available.
Package pdftexcmds Info: pdf@ifprimitive is available.
Package pdftexcmds Info: pdfdraftmode found.
)
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
38.
Package grfext Info: Graphics extension search list:
(grfext) [.pdf,.png,.jpg,.mps,.jpeg,.jbig2,.jb2,.PDF,.PNG,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) AppendGraphicsExtensions on input line 456.
)
(C:/Users/tiago/AppData/Local/Temp/Rtmp4KSpsc/seq35082e2523e2.fasta: . . . . .
. . . . . . . . [1
Non-PDF special ignored!

{C:/Users/tiago/AppData/Local/MiKTeX/2.9/pdftex/config/pdftex.map}] . . . . . .
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! TeX capacity exceeded, sorry [input stack size=5000].
<to be read again>
current@color
l.37 end{texshade}

If you really absolutely need more capacity,
you can ask a wizard to enlarge me.


Here is how much of TeX's memory you used:
6659 strings out of 493312
77084 string characters out of 3138899
293316 words of memory out of 3000000
10209 multiletter control sequences out of 15000+200000
4281 words of font info for 17 fonts, out of 3000000 for 9000
1141 hyphenation exceptions out of 8191
5000i,5n,57p,431b,1310s stack positions out of 5000i,500n,10000p,200000b,50000s
! ==> Fatal error occurred, no output PDF file produced!









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  • Welcome. The problem is that the document is "too large" (some operation eats up the TeX memory).
    – TeXnician
    Dec 7 '17 at 19:32










  • There is any way to increase TeX memory?
    – Tiago Bruno
    Dec 7 '17 at 19:39












  • You were completely right. I used a really small file as test and worked normally. Can I overcome the issue to print the big files?
    – Tiago Bruno
    Dec 7 '17 at 19:44










  • You might try LuaLaTeX. Or maybe search this site, we already have similar questions.
    – TeXnician
    Dec 7 '17 at 19:46












  • input stack overflows normally indicate a bug in the code.
    – Ulrike Fischer
    Dec 7 '17 at 20:04













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I am trying to compile some tex files into pdf files using pdflatex but it is not working. Can anyone spot what the problem is? I appreciate any kind of help. I was first trying using R but it seems that the problem is with pdflatex itself.



I just used:



pdflatex TcCLB50345390.tex


This is the error log:



This is pdfTeX, Version 3.14159265-2.6-1.40.18 (MiKTeX 2.9.6500 64-bit) (preloaded format=pdflatex 2017.12.7)  7 DEC 2017 17:11
entering extended mode
**./TcCLB50345390.tex
(TcCLB50345390.tex
LaTeX2e <2017-04-15>
Babel <3.15> and hyphenation patterns for 75 language(s) loaded.
("C:Program FilesMiKTeX 2.9texlatexbasearticle.cls"
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
("C:Program FilesMiKTeX 2.9texlatexbasesize10.clo"
File: size10.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
)
c@part=count79
c@section=count80
c@subsection=count81
c@subsubsection=count82
c@paragraph=count83
c@subparagraph=count84
c@figure=count85
c@table=count86
abovecaptionskip=skip41
belowcaptionskip=skip42
bibindent=dimen102
)
(C:UserstiagoAppDataRoamingMiKTeX2.9texlatextexshadetexshade.sty
Package: texshade 2011/05/13 LaTeX TeXshade (v1.24)

Package `texshade', Version 1.24 of 2011/12/01.
("C:Program FilesMiKTeX 2.9texlatexgraphicscolor.sty"
Package: color 2016/07/10 v1.1e Standard LaTeX Color (DPC)

("C:Program FilesMiKTeX 2.9texlatexgraphics-cfgcolor.cfg"
File: color.cfg 2016/01/02 v1.6 sample color configuration
)
Package color Info: Driver file: dvips.def on input line 147.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defdvips.def"
File: dvips.def 2017/06/20 v3.1d Graphics/color driver for dvips
)
("C:Program FilesMiKTeX 2.9texlatexgraphicsdvipsnam.def"
File: dvipsnam.def 2016/06/17 v3.0m Driver-dependent file (DPC,SPQR)
))
("C:Program FilesMiKTeX 2.9texlatexgraphicsgraphics.sty"
Package: graphics 2017/06/25 v1.2c Standard LaTeX Graphics (DPC,SPQR)

("C:Program FilesMiKTeX 2.9texlatexgraphicstrig.sty"
Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
)
("C:Program FilesMiKTeX 2.9texlatexgraphics-cfggraphics.cfg"
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 99.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defpdftex.def"
File: pdftex.def 2017/06/24 v1.0g Graphics/color driver for pdftex
))
structurefile=read1
featurefile=write3
alignfile=read2
sublogofile=read3
exp@rtfile=write4

("C:Program FilesMiKTeX 2.9texlatexamsfontsamssymb.sty"
Package: amssymb 2013/01/14 v3.01 AMS font symbols

("C:Program FilesMiKTeX 2.9texlatexamsfontsamsfonts.sty"
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
@emptytoks=toks14
symAMSa=mathgroup4
symAMSb=mathgroup5
LaTeX Font Info: Overwriting math alphabet `mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
))
symalphahelix=mathgroup6
loopcount=count87
innerloopcount=count88
outerloopcount=count89
seq@count=count90
killseq@count=count91
seq@percent=count92
res@count=count93
seq@pointer=count94
pos@count=count95
res@perline=count96
end@count=count97
cons@count=count98
total@count=count99
temp@count=count100
triple@count=count101
temp@@count=count102
pos@sum=count103
box@width=skip43
name@width=skip44
box@depth=skip45
width@tmp=skip46
box@height=skip47
number@width=skip48
line@stretch=skip49
center@fill=skip50
arrow@width=skip51
arrow@height=skip52
rule@thick=skip53
arrow@thick=skip54
logo@height=skip55
equal@width=skip56
equal@tmp=skip57
equal@height=skip58
temp@@length=skip59
vspace@legend=skip60
hspace@legend=skip61
Package color Info: Redefining color LightGray on input line 1704.
Package color Info: Redefining color LightLightGray on input line 1805.
Package color Info: Redefining color LightLightLightGray on input line 1907.
)
No file TcCLB50345390.aux.
openout1 = `TcCLB50345390.aux'.

LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
(C:UserstiagoAppDataRoamingMiKTeX2.9texcontextbasesupp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
scratchcounter=count104
scratchdimen=dimen103
scratchbox=box26
nofMPsegments=count105
nofMParguments=count106
everyMPshowfont=toks15
MPscratchCnt=count107
MPscratchDim=dimen104
MPnumerator=count108
makeMPintoPDFobject=count109
everyMPtoPDFconversion=toks16
) ("C:Program FilesMiKTeX 2.9texlatexoberdiekepstopdf-base.sty"
Package: epstopdf-base 2016/05/15 v2.6 Base part for package epstopdf

("C:Program FilesMiKTeX 2.9texgenericoberdiekinfwarerr.sty"
Package: infwarerr 2016/05/16 v1.4 Providing info/warning/error messages (HO)
)
("C:Program FilesMiKTeX 2.9texlatexoberdiekgrfext.sty"
Package: grfext 2016/05/16 v1.2 Manage graphics extensions (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekkvdefinekeys.sty"
Package: kvdefinekeys 2016/05/16 v1.4 Define keys (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekltxcmds.sty"
Package: ltxcmds 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
)))
("C:Program FilesMiKTeX 2.9texlatexoberdiekkvoptions.sty"
Package: kvoptions 2016/05/16 v3.12 Key value format for package options (HO)

("C:Program FilesMiKTeX 2.9texlatexgraphicskeyval.sty"
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
KV@toks@=toks17
)
("C:Program FilesMiKTeX 2.9texgenericoberdiekkvsetkeys.sty"
Package: kvsetkeys 2016/05/16 v1.17 Key value parser (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdieketexcmds.sty"
Package: etexcmds 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekifluatex.sty"
Package: ifluatex 2016/05/16 v1.4 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
)
Package etexcmds Info: Could not find expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined expanded.
(etexcmds) In the latter case, load this package earlier.
)))
("C:Program FilesMiKTeX 2.9texgenericoberdiekpdftexcmds.sty"
Package: pdftexcmds 2017/03/19 v0.25 Utility functions of pdfTeX for LuaTeX (HO
)

("C:Program FilesMiKTeX 2.9texgenericoberdiekifpdf.sty"
Package: ifpdf 2017/03/15 v3.2 Provides the ifpdf switch
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: pdf@primitive is available.
Package pdftexcmds Info: pdf@ifprimitive is available.
Package pdftexcmds Info: pdfdraftmode found.
)
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
38.
Package grfext Info: Graphics extension search list:
(grfext) [.pdf,.png,.jpg,.mps,.jpeg,.jbig2,.jb2,.PDF,.PNG,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) AppendGraphicsExtensions on input line 456.
)
(C:/Users/tiago/AppData/Local/Temp/Rtmp4KSpsc/seq35082e2523e2.fasta: . . . . .
. . . . . . . . [1
Non-PDF special ignored!

{C:/Users/tiago/AppData/Local/MiKTeX/2.9/pdftex/config/pdftex.map}] . . . . . .
. . . . . [2] . . . . . . . . . . . [3] . . . . . . .
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[27] . . . . . . . . . . . [28] . . . . . . . . . . . [29] . . . . . . . . . .
. [30] . . . . . . . . . . . [31] . . . . . . . . . . . [32] . . . . . . . . .
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[56] . . . . . . . . . . . [57] . . . . . . . . . . . [58] . . . . . . . . . .
. [59] . . . . . . . . . . . [60] . . . . . . . . . . . [61] . . . . . . . . .
. . [62] . . . . . . . . . . . [63] . . . . . . . . . . . [64] . . . . . . . .
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. [88] . . . . . . . . . . . [89] . . . . . . . . . . . [90] . . . . . . . . .
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! TeX capacity exceeded, sorry [input stack size=5000].
<to be read again>
current@color
l.37 end{texshade}

If you really absolutely need more capacity,
you can ask a wizard to enlarge me.


Here is how much of TeX's memory you used:
6659 strings out of 493312
77084 string characters out of 3138899
293316 words of memory out of 3000000
10209 multiletter control sequences out of 15000+200000
4281 words of font info for 17 fonts, out of 3000000 for 9000
1141 hyphenation exceptions out of 8191
5000i,5n,57p,431b,1310s stack positions out of 5000i,500n,10000p,200000b,50000s
! ==> Fatal error occurred, no output PDF file produced!









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I am trying to compile some tex files into pdf files using pdflatex but it is not working. Can anyone spot what the problem is? I appreciate any kind of help. I was first trying using R but it seems that the problem is with pdflatex itself.



I just used:



pdflatex TcCLB50345390.tex


This is the error log:



This is pdfTeX, Version 3.14159265-2.6-1.40.18 (MiKTeX 2.9.6500 64-bit) (preloaded format=pdflatex 2017.12.7)  7 DEC 2017 17:11
entering extended mode
**./TcCLB50345390.tex
(TcCLB50345390.tex
LaTeX2e <2017-04-15>
Babel <3.15> and hyphenation patterns for 75 language(s) loaded.
("C:Program FilesMiKTeX 2.9texlatexbasearticle.cls"
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
("C:Program FilesMiKTeX 2.9texlatexbasesize10.clo"
File: size10.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
)
c@part=count79
c@section=count80
c@subsection=count81
c@subsubsection=count82
c@paragraph=count83
c@subparagraph=count84
c@figure=count85
c@table=count86
abovecaptionskip=skip41
belowcaptionskip=skip42
bibindent=dimen102
)
(C:UserstiagoAppDataRoamingMiKTeX2.9texlatextexshadetexshade.sty
Package: texshade 2011/05/13 LaTeX TeXshade (v1.24)

Package `texshade', Version 1.24 of 2011/12/01.
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Package: color 2016/07/10 v1.1e Standard LaTeX Color (DPC)

("C:Program FilesMiKTeX 2.9texlatexgraphics-cfgcolor.cfg"
File: color.cfg 2016/01/02 v1.6 sample color configuration
)
Package color Info: Driver file: dvips.def on input line 147.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defdvips.def"
File: dvips.def 2017/06/20 v3.1d Graphics/color driver for dvips
)
("C:Program FilesMiKTeX 2.9texlatexgraphicsdvipsnam.def"
File: dvipsnam.def 2016/06/17 v3.0m Driver-dependent file (DPC,SPQR)
))
("C:Program FilesMiKTeX 2.9texlatexgraphicsgraphics.sty"
Package: graphics 2017/06/25 v1.2c Standard LaTeX Graphics (DPC,SPQR)

("C:Program FilesMiKTeX 2.9texlatexgraphicstrig.sty"
Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
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("C:Program FilesMiKTeX 2.9texlatexgraphics-cfggraphics.cfg"
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 99.

("C:Program FilesMiKTeX 2.9texlatexgraphics-defpdftex.def"
File: pdftex.def 2017/06/24 v1.0g Graphics/color driver for pdftex
))
structurefile=read1
featurefile=write3
alignfile=read2
sublogofile=read3
exp@rtfile=write4

("C:Program FilesMiKTeX 2.9texlatexamsfontsamssymb.sty"
Package: amssymb 2013/01/14 v3.01 AMS font symbols

("C:Program FilesMiKTeX 2.9texlatexamsfontsamsfonts.sty"
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
@emptytoks=toks14
symAMSa=mathgroup4
symAMSb=mathgroup5
LaTeX Font Info: Overwriting math alphabet `mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
))
symalphahelix=mathgroup6
loopcount=count87
innerloopcount=count88
outerloopcount=count89
seq@count=count90
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res@count=count93
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pos@count=count95
res@perline=count96
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cons@count=count98
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temp@count=count100
triple@count=count101
temp@@count=count102
pos@sum=count103
box@width=skip43
name@width=skip44
box@depth=skip45
width@tmp=skip46
box@height=skip47
number@width=skip48
line@stretch=skip49
center@fill=skip50
arrow@width=skip51
arrow@height=skip52
rule@thick=skip53
arrow@thick=skip54
logo@height=skip55
equal@width=skip56
equal@tmp=skip57
equal@height=skip58
temp@@length=skip59
vspace@legend=skip60
hspace@legend=skip61
Package color Info: Redefining color LightGray on input line 1704.
Package color Info: Redefining color LightLightGray on input line 1805.
Package color Info: Redefining color LightLightLightGray on input line 1907.
)
No file TcCLB50345390.aux.
openout1 = `TcCLB50345390.aux'.

LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
(C:UserstiagoAppDataRoamingMiKTeX2.9texcontextbasesupp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
scratchcounter=count104
scratchdimen=dimen103
scratchbox=box26
nofMPsegments=count105
nofMParguments=count106
everyMPshowfont=toks15
MPscratchCnt=count107
MPscratchDim=dimen104
MPnumerator=count108
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everyMPtoPDFconversion=toks16
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Package: epstopdf-base 2016/05/15 v2.6 Base part for package epstopdf

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Package: infwarerr 2016/05/16 v1.4 Providing info/warning/error messages (HO)
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Package: grfext 2016/05/16 v1.2 Manage graphics extensions (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekkvdefinekeys.sty"
Package: kvdefinekeys 2016/05/16 v1.4 Define keys (HO)

("C:Program FilesMiKTeX 2.9texgenericoberdiekltxcmds.sty"
Package: ltxcmds 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
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Package: kvoptions 2016/05/16 v3.12 Key value format for package options (HO)

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Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
KV@toks@=toks17
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Package: kvsetkeys 2016/05/16 v1.17 Key value parser (HO)

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Package: etexcmds 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)

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Package: ifluatex 2016/05/16 v1.4 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
)
Package etexcmds Info: Could not find expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined expanded.
(etexcmds) In the latter case, load this package earlier.
)))
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Package: pdftexcmds 2017/03/19 v0.25 Utility functions of pdfTeX for LuaTeX (HO
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("C:Program FilesMiKTeX 2.9texgenericoberdiekifpdf.sty"
Package: ifpdf 2017/03/15 v3.2 Provides the ifpdf switch
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Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: pdf@primitive is available.
Package pdftexcmds Info: pdf@ifprimitive is available.
Package pdftexcmds Info: pdfdraftmode found.
)
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
38.
Package grfext Info: Graphics extension search list:
(grfext) [.pdf,.png,.jpg,.mps,.jpeg,.jbig2,.jb2,.PDF,.PNG,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) AppendGraphicsExtensions on input line 456.
)
(C:/Users/tiago/AppData/Local/Temp/Rtmp4KSpsc/seq35082e2523e2.fasta: . . . . .
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Non-PDF special ignored!

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! TeX capacity exceeded, sorry [input stack size=5000].
<to be read again>
current@color
l.37 end{texshade}

If you really absolutely need more capacity,
you can ask a wizard to enlarge me.


Here is how much of TeX's memory you used:
6659 strings out of 493312
77084 string characters out of 3138899
293316 words of memory out of 3000000
10209 multiletter control sequences out of 15000+200000
4281 words of font info for 17 fonts, out of 3000000 for 9000
1141 hyphenation exceptions out of 8191
5000i,5n,57p,431b,1310s stack positions out of 5000i,500n,10000p,200000b,50000s
! ==> Fatal error occurred, no output PDF file produced!






pdftex miktex windows r






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asked Dec 7 '17 at 19:16









Tiago Bruno

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bumped to the homepage by Community 6 mins ago


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  • Welcome. The problem is that the document is "too large" (some operation eats up the TeX memory).
    – TeXnician
    Dec 7 '17 at 19:32










  • There is any way to increase TeX memory?
    – Tiago Bruno
    Dec 7 '17 at 19:39












  • You were completely right. I used a really small file as test and worked normally. Can I overcome the issue to print the big files?
    – Tiago Bruno
    Dec 7 '17 at 19:44










  • You might try LuaLaTeX. Or maybe search this site, we already have similar questions.
    – TeXnician
    Dec 7 '17 at 19:46












  • input stack overflows normally indicate a bug in the code.
    – Ulrike Fischer
    Dec 7 '17 at 20:04


















  • Welcome. The problem is that the document is "too large" (some operation eats up the TeX memory).
    – TeXnician
    Dec 7 '17 at 19:32










  • There is any way to increase TeX memory?
    – Tiago Bruno
    Dec 7 '17 at 19:39












  • You were completely right. I used a really small file as test and worked normally. Can I overcome the issue to print the big files?
    – Tiago Bruno
    Dec 7 '17 at 19:44










  • You might try LuaLaTeX. Or maybe search this site, we already have similar questions.
    – TeXnician
    Dec 7 '17 at 19:46












  • input stack overflows normally indicate a bug in the code.
    – Ulrike Fischer
    Dec 7 '17 at 20:04
















Welcome. The problem is that the document is "too large" (some operation eats up the TeX memory).
– TeXnician
Dec 7 '17 at 19:32




Welcome. The problem is that the document is "too large" (some operation eats up the TeX memory).
– TeXnician
Dec 7 '17 at 19:32












There is any way to increase TeX memory?
– Tiago Bruno
Dec 7 '17 at 19:39






There is any way to increase TeX memory?
– Tiago Bruno
Dec 7 '17 at 19:39














You were completely right. I used a really small file as test and worked normally. Can I overcome the issue to print the big files?
– Tiago Bruno
Dec 7 '17 at 19:44




You were completely right. I used a really small file as test and worked normally. Can I overcome the issue to print the big files?
– Tiago Bruno
Dec 7 '17 at 19:44












You might try LuaLaTeX. Or maybe search this site, we already have similar questions.
– TeXnician
Dec 7 '17 at 19:46






You might try LuaLaTeX. Or maybe search this site, we already have similar questions.
– TeXnician
Dec 7 '17 at 19:46














input stack overflows normally indicate a bug in the code.
– Ulrike Fischer
Dec 7 '17 at 20:04




input stack overflows normally indicate a bug in the code.
– Ulrike Fischer
Dec 7 '17 at 20:04










1 Answer
1






active

oldest

votes

















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0
down vote













I Found the origin of the problem. The text file was too big. Bigger than the size of the page. That was causing a fatal error.






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    I Found the origin of the problem. The text file was too big. Bigger than the size of the page. That was causing a fatal error.






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      I Found the origin of the problem. The text file was too big. Bigger than the size of the page. That was causing a fatal error.






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        I Found the origin of the problem. The text file was too big. Bigger than the size of the page. That was causing a fatal error.






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        I Found the origin of the problem. The text file was too big. Bigger than the size of the page. That was causing a fatal error.







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        share|improve this answer



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        answered Dec 7 '17 at 22:41









        Tiago Bruno

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