lalsuite pycbc won't install - Ubuntu












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I'm working through these instructions https://pycbc.org/pycbc/latest/html/install_lalsuite.html for installing pycbc which I need for my research, and I have some issues. Just under half way down that page, where it has



./00boot
./configure --prefix=${VIRTUAL_ENV}/opt/lalsuite --enable-swig-python --disable-lalstochastic --disable-lalxml --disable-lalinference --disable-laldetchar --disable-lalapps


I get these messages after running the ./configure line



checking whether PyArray_SetBaseObject is declared... yes

configure: error: SWIG version 2.0.12 or later is required

SWIG support can be disabled by using the --disable-swig configure option

configure: error: ./configure failed for lal


There's plenty more above it if anyone wants the whole thing.



I tried following these instructions http://www.linuxfromscratch.org/blfs/view/7.5/general/swig.html and https://help.dreamhost.com/hc/en-us/articles/215489188-How-to-install-a-newer-version-of-SWIG but that hasn't helped.



I'm now out of ideas and worried that if I keep trying random things I'll make it worse. Yesterday I reinstalled Ubuntu onto this computer, so there shouldn't be too much mess about it.



Cheers!



** Edit



If I try just a simple



pip install lalsuite pycbc


as following these instructions https://pycbc.org/pycbc/latest/html/install.html I get a seg fault:



Collecting lalsuite
Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
Collecting pycbc
Collecting ligo-segments (from lalsuite)
Collecting lscsoft-glue (from lalsuite)
Collecting matplotlib (from lalsuite)
Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
Collecting scipy (from lalsuite)
Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
Collecting python-dateutil (from lalsuite)
Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
Collecting numpy>=1.7 (from lalsuite)
Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
Collecting beautifulsoup4>=4.6.0 (from pycbc)
Using cached https://files.pythonhosted.org/packages/f8/c7/741c97d7366f4779ca73d244904978b43a81fd37d85fcf05ad19d472c1ce/beautifulsoup4-4.6.3-py2-none-any.whl
Collecting cython (from pycbc)
Using cached https://files.pythonhosted.org/packages/eb/b0/0069db01146b4810cbe2d7045ebbc80baca5470ee4b51b1e991eb90d8f07/Cython-0.29.2-cp27-cp27mu-manylinux1_x86_64.whl
Collecting jinja2 (from pycbc)
Using cached https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl
Collecting emcee==2.2.1 (from pycbc)
Collecting requests>=1.2.1 (from pycbc)
Using cached https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl
Collecting six>=1.10.0 (from pycbc)
Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting pillow (from pycbc)
Using cached https://files.pythonhosted.org/packages/9a/f6/3b3c82c5c75cae471e02fb584136168d732e17ae9db2d21c5dc82f9790f8/Pillow-5.3.0-cp27-cp27mu-manylinux1_x86_64.whl
Collecting mpld3>=0.3 (from pycbc)
Collecting kombine>=0.8.2 (from pycbc)
Using cached https://files.pythonhosted.org/packages/ce/70/d7eff8255247dd56b89f6547067ad418c10f71e796968f6208adbb68e032/kombine-0.8.3-py2.py3-none-any.whl
Collecting weave>=0.16.0 (from pycbc)
Collecting h5py>=2.5 (from pycbc)
Downloading https://files.pythonhosted.org/packages/53/08/27e4e9a369321862ffdce80ff1770553e9daec65d98befb2e14e7478b698/h5py-2.9.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8MB)
100% |████████████████████████████████| 2.8MB 453kB/s
Collecting Mako>=1.0.1 (from pycbc)
Collecting decorator>=3.4.2 (from pycbc)
Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
Collecting astropy<3.0.0,>=2.0.3 (from pycbc)
Collecting ligo-common (from ligo-segments->lalsuite)
Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
Collecting subprocess32 (from matplotlib->lalsuite)
Collecting pytz (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
Collecting cycler>=0.10 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from jinja2->pycbc)
Using cached https://files.pythonhosted.org/packages/bc/3a/6bfd7b4b202fa33bdda8e4e3d3acc719f381fd730f9a0e7c5f34e845bd4d/MarkupSafe-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl
Collecting chardet<3.1.0,>=3.0.2 (from requests>=1.2.1->pycbc)
Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
Collecting idna<2.9,>=2.5 (from requests>=1.2.1->pycbc)
Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
Collecting certifi>=2017.4.17 (from requests>=1.2.1->pycbc)
Using cached https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl
Collecting urllib3<1.25,>=1.21.1 (from requests>=1.2.1->pycbc)
Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl
Collecting pytest<3.7,>=2.8 (from astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/d8/e9/73246a565c34c5f203dd78bc2382e0e93aa7a249cdaeba709099eb1bc701/pytest-3.6.4-py2.py3-none-any.whl
Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
Collecting pluggy<0.8,>=0.5 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/f5/f1/5a93c118663896d83f7bcbfb7f657ce1d0c0d617e6b4a443a53abcc658ca/pluggy-0.7.1-py2.py3-none-any.whl
Collecting atomicwrites>=1.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/3a/9a/9d878f8d885706e2530402de6417141129a943802c084238914fa6798d97/atomicwrites-1.2.1-py2.py3-none-any.whl
Collecting py>=1.5.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/3e/c7/3da685ef117d42ac8d71af525208759742dd235f8094221fdaafcd3dba8f/py-1.7.0-py2.py3-none-any.whl
Collecting funcsigs; python_version < "3.0" (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
Collecting more-itertools>=4.0.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/fb/d3/77f337876600747ae307ea775ff264c5304a691941cd347382c7932c60ad/more_itertools-4.3.0-py2-none-any.whl
Collecting attrs>=17.4.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
Using cached https://files.pythonhosted.org/packages/3a/e1/5f9023cc983f1a628a8c2fd051ad19e76ff7b142a0faf329336f9a62a514/attrs-18.2.0-py2.py3-none-any.whl
Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, enCollecting lalsuite
Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
Collecting ligo-segments (from lalsuite)
Collecting lscsoft-glue (from lalsuite)
Collecting matplotlib (from lalsuite)
Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
Collecting scipy (from lalsuite)
Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
Collecting python-dateutil (from lalsuite)
Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
Collecting numpy>=1.7 (from lalsuite)
Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
Collecting ligo-common (from ligo-segments->lalsuite)
Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
Collecting six (from ligo-segments->lalsuite)
Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
Collecting subprocess32 (from matplotlib->lalsuite)
Collecting pytz (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
Collecting cycler>=0.10 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl enCollecting lalsuite
Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
Collecting ligo-segments (from lalsuite)
Collecting lscsoft-glue (from lalsuite)
Collecting matplotlib (from lalsuite)
Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
Collecting scipy (from lalsuite)
Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
Collecting python-dateutil (from lalsuite)
Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
Collecting numpy>=1.7 (from lalsuite)
Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
Collecting ligo-common (from ligo-segments->lalsuite)
Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
Collecting six (from ligo-segments->lalsuite)
Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
Collecting subprocess32 (from matplotlib->lalsuite)
Collecting pytz (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
Collecting cycler>=0.10 (from matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
Collecting idna>=2.1 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite
Segmentation fault (core dumped)
Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
Collecting idna>=2.1 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite
Segmentation fault (core dumped) idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite, beautifulsoup4, cython, MarkupSafe, jinja2, emcee, chardet, certifi, urllib3, requests, pillow, mpld3, kombine, weave, h5py, Mako, decorator, pluggy, atomicwrites, py, funcsigs, more-itertools, attrs, pytest, astropy, pycbc


Segmentation fault (core dumped)










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    0














    I'm working through these instructions https://pycbc.org/pycbc/latest/html/install_lalsuite.html for installing pycbc which I need for my research, and I have some issues. Just under half way down that page, where it has



    ./00boot
    ./configure --prefix=${VIRTUAL_ENV}/opt/lalsuite --enable-swig-python --disable-lalstochastic --disable-lalxml --disable-lalinference --disable-laldetchar --disable-lalapps


    I get these messages after running the ./configure line



    checking whether PyArray_SetBaseObject is declared... yes

    configure: error: SWIG version 2.0.12 or later is required

    SWIG support can be disabled by using the --disable-swig configure option

    configure: error: ./configure failed for lal


    There's plenty more above it if anyone wants the whole thing.



    I tried following these instructions http://www.linuxfromscratch.org/blfs/view/7.5/general/swig.html and https://help.dreamhost.com/hc/en-us/articles/215489188-How-to-install-a-newer-version-of-SWIG but that hasn't helped.



    I'm now out of ideas and worried that if I keep trying random things I'll make it worse. Yesterday I reinstalled Ubuntu onto this computer, so there shouldn't be too much mess about it.



    Cheers!



    ** Edit



    If I try just a simple



    pip install lalsuite pycbc


    as following these instructions https://pycbc.org/pycbc/latest/html/install.html I get a seg fault:



    Collecting lalsuite
    Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting pycbc
    Collecting ligo-segments (from lalsuite)
    Collecting lscsoft-glue (from lalsuite)
    Collecting matplotlib (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting scipy (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting python-dateutil (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
    Collecting numpy>=1.7 (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting beautifulsoup4>=4.6.0 (from pycbc)
    Using cached https://files.pythonhosted.org/packages/f8/c7/741c97d7366f4779ca73d244904978b43a81fd37d85fcf05ad19d472c1ce/beautifulsoup4-4.6.3-py2-none-any.whl
    Collecting cython (from pycbc)
    Using cached https://files.pythonhosted.org/packages/eb/b0/0069db01146b4810cbe2d7045ebbc80baca5470ee4b51b1e991eb90d8f07/Cython-0.29.2-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting jinja2 (from pycbc)
    Using cached https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl
    Collecting emcee==2.2.1 (from pycbc)
    Collecting requests>=1.2.1 (from pycbc)
    Using cached https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl
    Collecting six>=1.10.0 (from pycbc)
    Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
    Collecting pillow (from pycbc)
    Using cached https://files.pythonhosted.org/packages/9a/f6/3b3c82c5c75cae471e02fb584136168d732e17ae9db2d21c5dc82f9790f8/Pillow-5.3.0-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting mpld3>=0.3 (from pycbc)
    Collecting kombine>=0.8.2 (from pycbc)
    Using cached https://files.pythonhosted.org/packages/ce/70/d7eff8255247dd56b89f6547067ad418c10f71e796968f6208adbb68e032/kombine-0.8.3-py2.py3-none-any.whl
    Collecting weave>=0.16.0 (from pycbc)
    Collecting h5py>=2.5 (from pycbc)
    Downloading https://files.pythonhosted.org/packages/53/08/27e4e9a369321862ffdce80ff1770553e9daec65d98befb2e14e7478b698/h5py-2.9.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8MB)
    100% |████████████████████████████████| 2.8MB 453kB/s
    Collecting Mako>=1.0.1 (from pycbc)
    Collecting decorator>=3.4.2 (from pycbc)
    Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
    Collecting astropy<3.0.0,>=2.0.3 (from pycbc)
    Collecting ligo-common (from ligo-segments->lalsuite)
    Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
    Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
    Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
    Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
    Collecting subprocess32 (from matplotlib->lalsuite)
    Collecting pytz (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
    Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting cycler>=0.10 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
    Collecting MarkupSafe>=0.23 (from jinja2->pycbc)
    Using cached https://files.pythonhosted.org/packages/bc/3a/6bfd7b4b202fa33bdda8e4e3d3acc719f381fd730f9a0e7c5f34e845bd4d/MarkupSafe-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting chardet<3.1.0,>=3.0.2 (from requests>=1.2.1->pycbc)
    Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
    Collecting idna<2.9,>=2.5 (from requests>=1.2.1->pycbc)
    Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
    Collecting certifi>=2017.4.17 (from requests>=1.2.1->pycbc)
    Using cached https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl
    Collecting urllib3<1.25,>=1.21.1 (from requests>=1.2.1->pycbc)
    Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl
    Collecting pytest<3.7,>=2.8 (from astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/d8/e9/73246a565c34c5f203dd78bc2382e0e93aa7a249cdaeba709099eb1bc701/pytest-3.6.4-py2.py3-none-any.whl
    Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
    Collecting pluggy<0.8,>=0.5 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/f5/f1/5a93c118663896d83f7bcbfb7f657ce1d0c0d617e6b4a443a53abcc658ca/pluggy-0.7.1-py2.py3-none-any.whl
    Collecting atomicwrites>=1.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/3a/9a/9d878f8d885706e2530402de6417141129a943802c084238914fa6798d97/atomicwrites-1.2.1-py2.py3-none-any.whl
    Collecting py>=1.5.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/3e/c7/3da685ef117d42ac8d71af525208759742dd235f8094221fdaafcd3dba8f/py-1.7.0-py2.py3-none-any.whl
    Collecting funcsigs; python_version < "3.0" (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
    Collecting more-itertools>=4.0.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/fb/d3/77f337876600747ae307ea775ff264c5304a691941cd347382c7932c60ad/more_itertools-4.3.0-py2-none-any.whl
    Collecting attrs>=17.4.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
    Using cached https://files.pythonhosted.org/packages/3a/e1/5f9023cc983f1a628a8c2fd051ad19e76ff7b142a0faf329336f9a62a514/attrs-18.2.0-py2.py3-none-any.whl
    Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
    Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
    Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
    Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, enCollecting lalsuite
    Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting ligo-segments (from lalsuite)
    Collecting lscsoft-glue (from lalsuite)
    Collecting matplotlib (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting scipy (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting python-dateutil (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
    Collecting numpy>=1.7 (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting ligo-common (from ligo-segments->lalsuite)
    Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
    Collecting six (from ligo-segments->lalsuite)
    Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
    Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
    Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
    Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
    Collecting subprocess32 (from matplotlib->lalsuite)
    Collecting pytz (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
    Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting cycler>=0.10 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
    Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
    Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl enCollecting lalsuite
    Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting ligo-segments (from lalsuite)
    Collecting lscsoft-glue (from lalsuite)
    Collecting matplotlib (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting scipy (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting python-dateutil (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
    Collecting numpy>=1.7 (from lalsuite)
    Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting ligo-common (from ligo-segments->lalsuite)
    Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
    Collecting six (from ligo-segments->lalsuite)
    Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
    Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
    Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
    Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
    Collecting subprocess32 (from matplotlib->lalsuite)
    Collecting pytz (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
    Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting cycler>=0.10 (from matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
    Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
    Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
    Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
    Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
    Collecting idna>=2.1 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
    Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
    Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite
    Segmentation fault (core dumped)
    Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
    Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
    Collecting idna>=2.1 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
    Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
    Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
    Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite
    Segmentation fault (core dumped) idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite, beautifulsoup4, cython, MarkupSafe, jinja2, emcee, chardet, certifi, urllib3, requests, pillow, mpld3, kombine, weave, h5py, Mako, decorator, pluggy, atomicwrites, py, funcsigs, more-itertools, attrs, pytest, astropy, pycbc


    Segmentation fault (core dumped)










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      0







      I'm working through these instructions https://pycbc.org/pycbc/latest/html/install_lalsuite.html for installing pycbc which I need for my research, and I have some issues. Just under half way down that page, where it has



      ./00boot
      ./configure --prefix=${VIRTUAL_ENV}/opt/lalsuite --enable-swig-python --disable-lalstochastic --disable-lalxml --disable-lalinference --disable-laldetchar --disable-lalapps


      I get these messages after running the ./configure line



      checking whether PyArray_SetBaseObject is declared... yes

      configure: error: SWIG version 2.0.12 or later is required

      SWIG support can be disabled by using the --disable-swig configure option

      configure: error: ./configure failed for lal


      There's plenty more above it if anyone wants the whole thing.



      I tried following these instructions http://www.linuxfromscratch.org/blfs/view/7.5/general/swig.html and https://help.dreamhost.com/hc/en-us/articles/215489188-How-to-install-a-newer-version-of-SWIG but that hasn't helped.



      I'm now out of ideas and worried that if I keep trying random things I'll make it worse. Yesterday I reinstalled Ubuntu onto this computer, so there shouldn't be too much mess about it.



      Cheers!



      ** Edit



      If I try just a simple



      pip install lalsuite pycbc


      as following these instructions https://pycbc.org/pycbc/latest/html/install.html I get a seg fault:



      Collecting lalsuite
      Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting pycbc
      Collecting ligo-segments (from lalsuite)
      Collecting lscsoft-glue (from lalsuite)
      Collecting matplotlib (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting scipy (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting python-dateutil (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
      Collecting numpy>=1.7 (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting beautifulsoup4>=4.6.0 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/f8/c7/741c97d7366f4779ca73d244904978b43a81fd37d85fcf05ad19d472c1ce/beautifulsoup4-4.6.3-py2-none-any.whl
      Collecting cython (from pycbc)
      Using cached https://files.pythonhosted.org/packages/eb/b0/0069db01146b4810cbe2d7045ebbc80baca5470ee4b51b1e991eb90d8f07/Cython-0.29.2-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting jinja2 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl
      Collecting emcee==2.2.1 (from pycbc)
      Collecting requests>=1.2.1 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl
      Collecting six>=1.10.0 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
      Collecting pillow (from pycbc)
      Using cached https://files.pythonhosted.org/packages/9a/f6/3b3c82c5c75cae471e02fb584136168d732e17ae9db2d21c5dc82f9790f8/Pillow-5.3.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting mpld3>=0.3 (from pycbc)
      Collecting kombine>=0.8.2 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/ce/70/d7eff8255247dd56b89f6547067ad418c10f71e796968f6208adbb68e032/kombine-0.8.3-py2.py3-none-any.whl
      Collecting weave>=0.16.0 (from pycbc)
      Collecting h5py>=2.5 (from pycbc)
      Downloading https://files.pythonhosted.org/packages/53/08/27e4e9a369321862ffdce80ff1770553e9daec65d98befb2e14e7478b698/h5py-2.9.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8MB)
      100% |████████████████████████████████| 2.8MB 453kB/s
      Collecting Mako>=1.0.1 (from pycbc)
      Collecting decorator>=3.4.2 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
      Collecting astropy<3.0.0,>=2.0.3 (from pycbc)
      Collecting ligo-common (from ligo-segments->lalsuite)
      Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
      Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
      Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
      Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
      Collecting subprocess32 (from matplotlib->lalsuite)
      Collecting pytz (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
      Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting cycler>=0.10 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
      Collecting MarkupSafe>=0.23 (from jinja2->pycbc)
      Using cached https://files.pythonhosted.org/packages/bc/3a/6bfd7b4b202fa33bdda8e4e3d3acc719f381fd730f9a0e7c5f34e845bd4d/MarkupSafe-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting chardet<3.1.0,>=3.0.2 (from requests>=1.2.1->pycbc)
      Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
      Collecting idna<2.9,>=2.5 (from requests>=1.2.1->pycbc)
      Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
      Collecting certifi>=2017.4.17 (from requests>=1.2.1->pycbc)
      Using cached https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl
      Collecting urllib3<1.25,>=1.21.1 (from requests>=1.2.1->pycbc)
      Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl
      Collecting pytest<3.7,>=2.8 (from astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/d8/e9/73246a565c34c5f203dd78bc2382e0e93aa7a249cdaeba709099eb1bc701/pytest-3.6.4-py2.py3-none-any.whl
      Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
      Collecting pluggy<0.8,>=0.5 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/f5/f1/5a93c118663896d83f7bcbfb7f657ce1d0c0d617e6b4a443a53abcc658ca/pluggy-0.7.1-py2.py3-none-any.whl
      Collecting atomicwrites>=1.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/3a/9a/9d878f8d885706e2530402de6417141129a943802c084238914fa6798d97/atomicwrites-1.2.1-py2.py3-none-any.whl
      Collecting py>=1.5.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/3e/c7/3da685ef117d42ac8d71af525208759742dd235f8094221fdaafcd3dba8f/py-1.7.0-py2.py3-none-any.whl
      Collecting funcsigs; python_version < "3.0" (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
      Collecting more-itertools>=4.0.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/fb/d3/77f337876600747ae307ea775ff264c5304a691941cd347382c7932c60ad/more_itertools-4.3.0-py2-none-any.whl
      Collecting attrs>=17.4.0 (from pytest<3.7,>=2.8->astropy<3.0.0,>=2.0.3->pycbc)
      Using cached https://files.pythonhosted.org/packages/3a/e1/5f9023cc983f1a628a8c2fd051ad19e76ff7b142a0faf329336f9a62a514/attrs-18.2.0-py2.py3-none-any.whl
      Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
      Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
      Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
      Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, enCollecting lalsuite
      Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting ligo-segments (from lalsuite)
      Collecting lscsoft-glue (from lalsuite)
      Collecting matplotlib (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting scipy (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting python-dateutil (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
      Collecting numpy>=1.7 (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting ligo-common (from ligo-segments->lalsuite)
      Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
      Collecting six (from ligo-segments->lalsuite)
      Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
      Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
      Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
      Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
      Collecting subprocess32 (from matplotlib->lalsuite)
      Collecting pytz (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
      Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting cycler>=0.10 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
      Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
      Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl enCollecting lalsuite
      Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting ligo-segments (from lalsuite)
      Collecting lscsoft-glue (from lalsuite)
      Collecting matplotlib (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting scipy (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting python-dateutil (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
      Collecting numpy>=1.7 (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting ligo-common (from ligo-segments->lalsuite)
      Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
      Collecting six (from ligo-segments->lalsuite)
      Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
      Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/96/af/9d29e6bd40823061aea2e0574ccb2fcf72bfd6130ce53d32773ec375458c/pyOpenSSL-18.0.0-py2.py3-none-any.whl
      Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
      Collecting backports.functools-lru-cache (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
      Collecting subprocess32 (from matplotlib->lalsuite)
      Collecting pytz (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/f8/0e/2365ddc010afb3d79147f1dd544e5ee24bf4ece58ab99b16fbb465ce6dc0/pytz-2018.7-py2.py3-none-any.whl
      Collecting kiwisolver>=1.0.1 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting cycler>=0.10 (from matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
      Collecting cryptography>=2.2.1 (from pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/7f/ba/383b51cc26e3141c689ce988814385c7659f5ba01c4b5f2de38233010b5f/cryptography-2.4.2-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->lalsuite)
      Using cached https://files.pythonhosted.org/packages/37/06/754589caf971b0d2d48f151c2586f62902d93dc908e2fd9b9b9f6aa3c9dd/setuptools-40.6.3-py2.py3-none-any.whl
      Collecting enum34; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
      Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
      Collecting idna>=2.1 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
      Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
      Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite
      Segmentation fault (core dumped)
      Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting asn1crypto>=0.21.0 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/ea/cd/35485615f45f30a510576f1a56d1e0a7ad7bd8ab5ed7cdc600ef7cd06222/asn1crypto-0.24.0-py2.py3-none-any.whl
      Collecting idna>=2.1 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
      Collecting ipaddress; python_version < "3" (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Using cached https://files.pythonhosted.org/packages/fc/d0/7fc3a811e011d4b388be48a0e381db8d990042df54aa4ef4599a31d39853/ipaddress-1.0.22-py2.py3-none-any.whl
      Collecting pycparser (from cffi!=1.11.3,>=1.7->cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
      Installing collected packages: ligo-common, six, ligo-segments, enum34, pycparser, cffi, asn1crypto, idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite
      Segmentation fault (core dumped) idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite, beautifulsoup4, cython, MarkupSafe, jinja2, emcee, chardet, certifi, urllib3, requests, pillow, mpld3, kombine, weave, h5py, Mako, decorator, pluggy, atomicwrites, py, funcsigs, more-itertools, attrs, pytest, astropy, pycbc


      Segmentation fault (core dumped)










      share|improve this question















      I'm working through these instructions https://pycbc.org/pycbc/latest/html/install_lalsuite.html for installing pycbc which I need for my research, and I have some issues. Just under half way down that page, where it has



      ./00boot
      ./configure --prefix=${VIRTUAL_ENV}/opt/lalsuite --enable-swig-python --disable-lalstochastic --disable-lalxml --disable-lalinference --disable-laldetchar --disable-lalapps


      I get these messages after running the ./configure line



      checking whether PyArray_SetBaseObject is declared... yes

      configure: error: SWIG version 2.0.12 or later is required

      SWIG support can be disabled by using the --disable-swig configure option

      configure: error: ./configure failed for lal


      There's plenty more above it if anyone wants the whole thing.



      I tried following these instructions http://www.linuxfromscratch.org/blfs/view/7.5/general/swig.html and https://help.dreamhost.com/hc/en-us/articles/215489188-How-to-install-a-newer-version-of-SWIG but that hasn't helped.



      I'm now out of ideas and worried that if I keep trying random things I'll make it worse. Yesterday I reinstalled Ubuntu onto this computer, so there shouldn't be too much mess about it.



      Cheers!



      ** Edit



      If I try just a simple



      pip install lalsuite pycbc


      as following these instructions https://pycbc.org/pycbc/latest/html/install.html I get a seg fault:



      Collecting lalsuite
      Using cached https://files.pythonhosted.org/packages/c7/d3/d77caabf6f5e4000637624c9613a6ed21bf04bdb8478a215ac3600d4b13f/lalsuite-6.49-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting pycbc
      Collecting ligo-segments (from lalsuite)
      Collecting lscsoft-glue (from lalsuite)
      Collecting matplotlib (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting scipy (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting python-dateutil (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl
      Collecting numpy>=1.7 (from lalsuite)
      Using cached https://files.pythonhosted.org/packages/de/37/fe7db552f4507f379d81dcb78e58e05030a8941757b1f664517d581b5553/numpy-1.15.4-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting beautifulsoup4>=4.6.0 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/f8/c7/741c97d7366f4779ca73d244904978b43a81fd37d85fcf05ad19d472c1ce/beautifulsoup4-4.6.3-py2-none-any.whl
      Collecting cython (from pycbc)
      Using cached https://files.pythonhosted.org/packages/eb/b0/0069db01146b4810cbe2d7045ebbc80baca5470ee4b51b1e991eb90d8f07/Cython-0.29.2-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting jinja2 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl
      Collecting emcee==2.2.1 (from pycbc)
      Collecting requests>=1.2.1 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl
      Collecting six>=1.10.0 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
      Collecting pillow (from pycbc)
      Using cached https://files.pythonhosted.org/packages/9a/f6/3b3c82c5c75cae471e02fb584136168d732e17ae9db2d21c5dc82f9790f8/Pillow-5.3.0-cp27-cp27mu-manylinux1_x86_64.whl
      Collecting mpld3>=0.3 (from pycbc)
      Collecting kombine>=0.8.2 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/ce/70/d7eff8255247dd56b89f6547067ad418c10f71e796968f6208adbb68e032/kombine-0.8.3-py2.py3-none-any.whl
      Collecting weave>=0.16.0 (from pycbc)
      Collecting h5py>=2.5 (from pycbc)
      Downloading https://files.pythonhosted.org/packages/53/08/27e4e9a369321862ffdce80ff1770553e9daec65d98befb2e14e7478b698/h5py-2.9.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8MB)
      100% |████████████████████████████████| 2.8MB 453kB/s
      Collecting Mako>=1.0.1 (from pycbc)
      Collecting decorator>=3.4.2 (from pycbc)
      Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
      Collecting astropy<3.0.0,>=2.0.3 (from pycbc)
      Collecting ligo-common (from ligo-segments->lalsuite)
      Using cached https://files.pythonhosted.org/packages/a6/9c/1fbe176feea9abad5c0f3fa090dcffccf44bbcba0f0c754b03d8fea1a36e/ligo_common-1.0.3-py2.py3-none-any.whl
      Collecting pyOpenSSL (from lscsoft-glue->lalsuite)
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      Segmentation fault (core dumped)
      Collecting cffi!=1.11.3,>=1.7 (from cryptography>=2.2.1->pyOpenSSL->lscsoft-glue->lalsuite)
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      Segmentation fault (core dumped) idna, ipaddress, cryptography, pyOpenSSL, numpy, lscsoft-glue, pyparsing, backports.functools-lru-cache, subprocess32, python-dateutil, pytz, setuptools, kiwisolver, cycler, matplotlib, scipy, lalsuite, beautifulsoup4, cython, MarkupSafe, jinja2, emcee, chardet, certifi, urllib3, requests, pillow, mpld3, kombine, weave, h5py, Mako, decorator, pluggy, atomicwrites, py, funcsigs, more-itertools, attrs, pytest, astropy, pycbc


      Segmentation fault (core dumped)







      ubuntu python configure segmentation-fault






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          If you just want to install lalsuite and not develop it, have you considered installing from pip as pip install lalsuite?



          If you do want to build from source and want to install swig, it might be easier to use your package manager since swig3 is available.



          https://packages.ubuntu.com/cosmic/swig



          Something like apt-get install swig3.






          share|improve this answer








          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.


















          • That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
            – user1153070
            yesterday










          • And I'm not interested in developing anything, I just want to use it.
            – user1153070
            yesterday











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          0














          If you just want to install lalsuite and not develop it, have you considered installing from pip as pip install lalsuite?



          If you do want to build from source and want to install swig, it might be easier to use your package manager since swig3 is available.



          https://packages.ubuntu.com/cosmic/swig



          Something like apt-get install swig3.






          share|improve this answer








          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.


















          • That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
            – user1153070
            yesterday










          • And I'm not interested in developing anything, I just want to use it.
            – user1153070
            yesterday
















          0














          If you just want to install lalsuite and not develop it, have you considered installing from pip as pip install lalsuite?



          If you do want to build from source and want to install swig, it might be easier to use your package manager since swig3 is available.



          https://packages.ubuntu.com/cosmic/swig



          Something like apt-get install swig3.






          share|improve this answer








          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.


















          • That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
            – user1153070
            yesterday










          • And I'm not interested in developing anything, I just want to use it.
            – user1153070
            yesterday














          0












          0








          0






          If you just want to install lalsuite and not develop it, have you considered installing from pip as pip install lalsuite?



          If you do want to build from source and want to install swig, it might be easier to use your package manager since swig3 is available.



          https://packages.ubuntu.com/cosmic/swig



          Something like apt-get install swig3.






          share|improve this answer








          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.









          If you just want to install lalsuite and not develop it, have you considered installing from pip as pip install lalsuite?



          If you do want to build from source and want to install swig, it might be easier to use your package manager since swig3 is available.



          https://packages.ubuntu.com/cosmic/swig



          Something like apt-get install swig3.







          share|improve this answer








          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.









          share|improve this answer



          share|improve this answer






          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.









          answered 2 days ago









          Alex Nitz

          1




          1




          New contributor




          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.





          New contributor





          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.






          Alex Nitz is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
          Check out our Code of Conduct.












          • That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
            – user1153070
            yesterday










          • And I'm not interested in developing anything, I just want to use it.
            – user1153070
            yesterday


















          • That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
            – user1153070
            yesterday










          • And I'm not interested in developing anything, I just want to use it.
            – user1153070
            yesterday
















          That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
          – user1153070
          yesterday




          That was the first thing I tried.. I don't have the computer with me right now though so I can't say why that failed
          – user1153070
          yesterday












          And I'm not interested in developing anything, I just want to use it.
          – user1153070
          yesterday




          And I'm not interested in developing anything, I just want to use it.
          – user1153070
          yesterday


















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